Gene detail

Detail information of GWHGAAZE026950

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10754.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9C519\|WRKY6_ARATH	4E-140	WRKY transcription factor 6
trEMBL	tr\|A0A068UR90\|A0A068UR90_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_47 {ECO:0000313\|EMBL:CDP10754.1}
TAIR10	AT1G62300.1	3E-89	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12665028	12668150	-
GWHAAZE00000008	mRNA	12665028	12668150	-
GWHAAZE00000008	exon	12667869	12668150	-
GWHAAZE00000008	exon	12667525	12667623	-
GWHAAZE00000008	exon	12666339	12666866	-
GWHAAZE00000008	exon	12666145	12666258	-
GWHAAZE00000008	exon	12665028	12665714	-
GWHAAZE00000008	CDS	12667869	12668150	-
GWHAAZE00000008	CDS	12667525	12667623	-
GWHAAZE00000008	CDS	12666339	12666866	-
GWHAAZE00000008	CDS	12666145	12666258	-
GWHAAZE00000008	CDS	12665028	12665714	-

Transcript Sequence
>GWHTAAZE026984 ATGGCCAGAGGTAGTGGACTCTCCTTTGATCCAGATCCCATCGCATTATTTCAACACAAACCAACAATTATCAATTCTTTCTCCCACCACCGGAGCCACCGCATGGATGATCCCACCACTATCCAATTCCCTGTTAATCTCAACTGTCCCAGAGATCGTGACGATGACCAATCCCAGCCGTCCGATGACAAACAAGCTGTGGACTTCTTCAAGAGAGATGACCGCGCCATCACTGCCGCCCCCGCTGGCGACCGCGCCACCACCACTGAATTCGCTTTCAACACTGGTTTGAATCTTCTCACCGGAAATACGACTAGTGATCAGTCAATAGTGGATGATGGTATATCTCCAAACTCCGATGATAAAAGAGCTAAAAGTGAGCTAGCGGTTGTTCAAGCAGAACTGAAAAGATTGAGCACGGAGAATCAACAGTTACGTGAAATGGTAAACCAAGCAACCAACAACTACAACAATCTCCAGTTGCATTTAGCCACGCTTTTGCAACAACAACAAGAGGCCGAAAACAACACTGAAGAAGAACACAAAGTAAAAATCGAAGATAGACTACAACAAAACCATAATTCTAGTAACACTAGTGGACGAGGACTATTAGTGCCTCGAAGGTTTTTGGATCTAGGCTTAGCTGGCACCGAAGAAAAAGATGAGCCTTCACATTCCTCATTGGAAGGCCGGAGTGGCGAGCAGTCCCGATCCCCACCGGCGAATAACGTGGAATCGGCATCCAAGGAATATACGAGAGAAGATAGTCCAGATCAAGGATCTCATCAGGTTTGGGGATCTAACAAGGTTTCTAGATTGAATAACTCTGCGAAGAATGTGGATCAGGCTACTGAGGCAACGATTAGGAAAGCTCGCGTGTCTGTTAGGGCACGATCAGAGGCATCAATGATTACAGATGGATGTCAATGGAGGAAGTATGGACAGAAAATGGCAAAGGGGAATCCATGCCCTCGAGCCTATTATCGGTGCACCATGTCTGCTGGTTGCCCAGTTAGAAAACAGGTGCAAAGATGTGCAGAAGACAGAACCATCCTCATTACCACATACGAAGGCAACCACAACCACCCACTGCCGCCAGCTGCCATGGCAATGGCATCAACAACCTCCTCCGCCGCCCGTATGTTACTCTCTGGCTCCATGCCAAGTGCTGACGGCATAATGAACTCCAATTTCCTAGCCAGAACTCTCCTCCCCTGCTCATCAAACATGGCCACAATTTCAGCCTCAGCTCCATTTCCCACTGTTACATTGGACCTTACCCAATCCCCCAACCCATTACAATTTCCAACAAGGTCGCCAAACCAATTCCCTCCCCAAAATTTCCCCGCCTCACAAGCCTTGTTATTGCCTCAAATTTTCGGCCAGGCGCTATATAACCAATCAAAATTCTCCGGTCTTCAAATGTCAAGTCAAGAGATGGAAGGTTCTCAATTAGGCCACCAGCAACCACCCATGCACCACCACGCTCAGCCTAATTCAGTGGCTGACACAGTGACTGCCCTTACCGCGGATCCCAATTTCGCGGCAGCGCTGGCAGCTGCTATTAGTTCTATCATTGGCGGTTCACAAAATACTGTGGCCACCACCACGACCACCAGGAATAACAATGGTAGCGTTACTAAGAGCAATAATAATAACAATGGCAACAATAAAGTTGGGAATTCGAATAATCCGGGGAATAGAGAGTGA

Network for GWHGAAZE026950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	306	363	2.50E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.778
	SRR3591706	second leaf	2.592
	SRR3591707	mature leaf	10.971
	SRR3591708	Shoot apex	2.942
	SRR3591709	Stem	3.069
	SRR3591710	White floral bud	6.895
	SRR3591711	White flower	55.817
	SRR3591712	Green floral bud	2.873
	SRR3591713	Yellow flower	132.193
SRP173429	SRR8316895	Juvenile bud stage	7.499
	SRR8316896	Juvenile bud stage	14.469
	SRR8316897	Juvenile bud stage	4.187
	SRR8316894	Third green stage	4.230
	SRR8316900	Third green stage	3.275
	SRR8316901	Third green stage	4.505
	SRR8316898	Complete white stage	1.929
	SRR8316899	Complete white stage	3.471
	SRR8316903	Complete white stage	4.823
	SRR8316902	Silver flowering stage	22.662
	SRR8316904	Silver flowering stage	32.393
	SRR8316905	Silver flowering stage	15.106
	SRR8316906	Gold flowering stage	96.328
	SRR8316907	Gold flowering stage	101.525
	SRR8316908	Gold flowering stage	120.544
SRP132670	SRR6706286	Control	6.152
	SRR6706287	Light intensity 50%	4.077
	SRR6706288	Light intensity 20%	2.985
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.349
	CNS0095593	Slightly white alabastrum(diploid) 2	8.913
	CNS0095594	Slightly white alabastrum(diploid) 3	13.762
	CNS0095595	Whole white alabastrum(diploid) 2	4.762
	CNS0095596	Whole white alabastrum(diploid) 3	4.900
	CNS0095597	Whole white alabastrum(diploid) 4	4.288
	CNS0095598	Silvery flower (diploied) 1	14.970
	CNS0095599	Silvery flower (diploied) 2	12.445
	CNS0095600	Silvery flower (diploied) 3	48.422
	CNS0095601	Golden flower (diploid) 1	18.210
	CNS0095602	Golden flower (diploid) 2	80.981
	CNS0095603	Golden flower (diploid) 3	82.509
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.041
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.740
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.406
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.369
	CNS0095610	Silvery flower (tetraploid) 1	68.520
	CNS0095611	Silvery flower (tetraploid) 2	53.188
	CNS0095612	Silvery flower (tetraploid) 3	34.559
	CNS0095613	Golden flower (tetraploid) 1	94.056
	CNS0095614	Golden flower (tetraploid) 2	92.401
	CNS0095615	Golden flower (tetraploid) 3	89.780
CRA001975	CRR073297	Stem 1	13.233
	CRR073298	Stem 2	13.179
	CRR073299	Stem 3	6.980
	CRR073300	Leaf 1	7.920
	CRR073301	Leaf 2	9.182
	CRR073302	Leaf 3	4.588
	CRR073303	Juvenile bud 1	5.489
	CRR073304	Juvenile bud 2	3.107
	CRR073305	Juvenile bud 3	10.051
	CRR073306	Third green 1	5.278
	CRR073307	Third green 2	2.660
	CRR073308	Third green 3	3.315
	CRR073309	Second white 1	21.771
	CRR073310	Second white 2	25.990
	CRR073311	Second white 3	37.512
	CRR073312	Silver flowering 1	112.602
	CRR073313	Silver flowering 2	108.804
	CRR073314	Silver flowering 3	103.541
	CRR073315	Gold flowering 1	9.016
	CRR073316	Gold flowering 2	16.745
	CRR073317	Gold flowering 3	10.479
	CRR073318	Tawny withering 1	25.151
	CRR073319	Tawny withering 2	10.507
	CRR073320	Tawny withering 3	8.752