Gene detail

Detail information of GWHGAAZE026979

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003633287.1	0	PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial isoform X1 [Vitis vinifera]
COG	YP_002297421.1	5E-88	lipid-A-disaccharide synthase
Swissprot	tr\|F4IF99\|LPXB_ARATH	0	Probable lipid-A-disaccharide synthase, mitochondrial (Precursor)
trEMBL	tr\|D7TEG2\|D7TEG2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28885.3}
TAIR10	AT2G04560.1	3E-146	transferases, transferring glycosyl groups

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13114287	13118865	+
GWHAAZE00000008	mRNA	13114287	13118865	+
GWHAAZE00000008	exon	13114287	13114522	+
GWHAAZE00000008	exon	13115243	13115342	+
GWHAAZE00000008	exon	13115833	13116010	+
GWHAAZE00000008	exon	13116110	13116333	+
GWHAAZE00000008	exon	13116656	13116734	+
GWHAAZE00000008	exon	13117285	13117523	+
GWHAAZE00000008	exon	13118129	13118355	+
GWHAAZE00000008	exon	13118676	13118865	+
GWHAAZE00000008	CDS	13114287	13114522	+
GWHAAZE00000008	CDS	13115243	13115342	+
GWHAAZE00000008	CDS	13115833	13116010	+
GWHAAZE00000008	CDS	13116110	13116333	+
GWHAAZE00000008	CDS	13116656	13116734	+
GWHAAZE00000008	CDS	13117285	13117523	+
GWHAAZE00000008	CDS	13118129	13118355	+
GWHAAZE00000008	CDS	13118676	13118865	+

Transcript Sequence
>GWHTAAZE027013 ATGTTGCGTAGAACAAGCCGGAATTTGAGCCCTTGGGTTGATGCGGGGTTGTTGCGGTTATCGAGAAGTTCTTTCTCTGTTTCGAGCCAAGCTGCTGTGGATATGGCTTGTAAAGATGGGGAACTAAGGGTCTTCATAGTTGCAGGAGAGGTTTCTGGAGATACTATAGGATCTCGTCTTATGGTTTCTCTAAAGAAGCTTTCTCCTTTTCCCATACGGTTTGGTGGTGTTGGAGGGTTTATGATGACCAAGCAAGGATTGTGCTCTCTGTTCCCCATGGAGGATATTGCAGTAATGGGAATTTGGGAGTTGTTACCGCATCTGAATAAGTTCAGAGATGCATTGCTGAACCTATTGATTTGATTTGAACCCATCTTGATTTGATCATTTGAACTTTGAACTTGGCAGGTTAATTTGAAACAAACAATAGAGGCTGCAGTTTTATTTCGGCCACATGTCATAGTAACAGTAGATGCCAAGGGGTTCTCTTTCCGTCTCCTAAAGCAGCTACGTGCTAGATATGGTCGGCAAGGATGGGTTAGCCCTACACACTTCCATTATGTAGCACCATCATTCTGGGCTTGGAAAGGAGGCGAACCAAGACTCAAAGGGCTCACTGAATTTGTGGACCACATCTTGTGTATTCTTCCATTTGAAGAGGAAGTGCTCAAATGCAATGGCTTAGTGGCAACGTTTGTGGGTCACCCCATACTAGAAGATGTTCTAGATTTGAACTCGGGAAAGGATACAATAGAAAATGGATGGAAAGTGCAAGGAAATGGTGAAGAATTCCGAAGTACATATGGAATATCTTCAGGTTCCACAATCATCACCTTGCTTCCTGGAAGCAGATTACAGGAGGTAAACCGTATGCTTCCCATCTTCTCCAGCACAATGGAAATATTGAAGGACTCCTTTTCAGAGTTGACGACAGTAGTCCACGTGGCGCCTAATCAGCATGTAGAAGATTACATCAGCAGAATTGTTGACGTGTGGCCCACATCTGTTATCTTGATTCCTGGAGGATCTTCTCGCACCAAATATGATGCATATGTTGCAAGCAGAGTAGCATTGTGTACCTCCGGGACAGTGGCCATGGAGTTGCAGCTTGCAAGGTTACCATGTGTTGTTGCCTATAGAGCCCATCTCCTTACGGAATGGTATATACGATACAAAGCTAAAGTACCCTACGTCTCCCTCCCCAATATTCTTCTCGACTCCCCTATAATTCCCGAAGCTCTCTTTCAAGCCTGCACACCCTCAAAACTCGCACTATTGCTCAAGGAGTTAATACATGACGAAGGGTTTCGTGAAGAACAGATCGTTGCTGCTGAAAAGGTTACCAAATTACTATATCCTTCAAATCGACTCGTTGAGAACTCAATGGAGCACGATTTGAGATGTATGTTTCCTAGTAACACACCAAGTATGATTGCTGCATCCACTATTTTGTACTCTGTGAGGACGGCATGA

Network for GWHGAAZE026979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02684.16	LpxB	44	113	3.00E-14
PF02684.16	LpxB	137	454	2.20E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00748	lpxB	Metabolic pathways	map01100
K00748	lpxB	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name
GO:0009245	biological_process	lipid A biosynthetic process
GO:0008915	molecular_function	lipid-A-disaccharide synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.448
	SRR3591706	second leaf	7.644
	SRR3591707	mature leaf	5.537
	SRR3591708	Shoot apex	11.641
	SRR3591709	Stem	5.885
	SRR3591710	White floral bud	3.434
	SRR3591711	White flower	3.032
	SRR3591712	Green floral bud	5.579
	SRR3591713	Yellow flower	2.944
SRP173429	SRR8316895	Juvenile bud stage	4.019
	SRR8316896	Juvenile bud stage	7.450
	SRR8316897	Juvenile bud stage	2.302
	SRR8316894	Third green stage	2.933
	SRR8316900	Third green stage	6.176
	SRR8316901	Third green stage	5.708
	SRR8316898	Complete white stage	0.915
	SRR8316899	Complete white stage	9.843
	SRR8316903	Complete white stage	1.550
	SRR8316902	Silver flowering stage	0.434
	SRR8316904	Silver flowering stage	0.504
	SRR8316905	Silver flowering stage	0.255
	SRR8316906	Gold flowering stage	0.717
	SRR8316907	Gold flowering stage	1.560
	SRR8316908	Gold flowering stage	1.421
SRP132670	SRR6706286	Control	6.034
	SRR6706287	Light intensity 50%	6.192
	SRR6706288	Light intensity 20%	6.884
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.412
	CNS0095593	Slightly white alabastrum(diploid) 2	6.434
	CNS0095594	Slightly white alabastrum(diploid) 3	4.741
	CNS0095595	Whole white alabastrum(diploid) 2	4.989
	CNS0095596	Whole white alabastrum(diploid) 3	3.752
	CNS0095597	Whole white alabastrum(diploid) 4	4.364
	CNS0095598	Silvery flower (diploied) 1	5.312
	CNS0095599	Silvery flower (diploied) 2	3.435
	CNS0095600	Silvery flower (diploied) 3	1.903
	CNS0095601	Golden flower (diploid) 1	3.640
	CNS0095602	Golden flower (diploid) 2	1.952
	CNS0095603	Golden flower (diploid) 3	1.677
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.234
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.440
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.067
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.359
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.596
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.920
	CNS0095610	Silvery flower (tetraploid) 1	2.780
	CNS0095611	Silvery flower (tetraploid) 2	3.307
	CNS0095612	Silvery flower (tetraploid) 3	1.236
	CNS0095613	Golden flower (tetraploid) 1	1.225
	CNS0095614	Golden flower (tetraploid) 2	1.903
	CNS0095615	Golden flower (tetraploid) 3	0.893
CRA001975	CRR073297	Stem 1	6.596
	CRR073298	Stem 2	4.900
	CRR073299	Stem 3	3.402
	CRR073300	Leaf 1	6.878
	CRR073301	Leaf 2	6.967
	CRR073302	Leaf 3	2.813
	CRR073303	Juvenile bud 1	2.758
	CRR073304	Juvenile bud 2	1.043
	CRR073305	Juvenile bud 3	3.352
	CRR073306	Third green 1	0.108
	CRR073307	Third green 2	0.233
	CRR073308	Third green 3	0.191
	CRR073309	Second white 1	0.098
	CRR073310	Second white 2	0.336
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.735
	CRR073316	Gold flowering 2	7.249
	CRR073317	Gold flowering 3	1.231
	CRR073318	Tawny withering 1	4.577
	CRR073319	Tawny withering 2	4.054
	CRR073320	Tawny withering 3	5.637