Gene detail

Detail information of GWHGAAZE026981

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002264290.1	PREDICTED: transcription initiation factor TFIID subunit 6 [Vitis vinifera]
Swissprot	tr\|Q9MAU3\|TAF6_ARATH	Transcription initiation factor TFIID subunit 6
trEMBL	tr\|D7TE54\|D7TE54_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28777.3}
TAIR10	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13151756	13159170	+
GWHAAZE00000008	mRNA	13151756	13159170	+
GWHAAZE00000008	exon	13151756	13151881	+
GWHAAZE00000008	exon	13154366	13154452	+
GWHAAZE00000008	exon	13154534	13154677	+
GWHAAZE00000008	exon	13154769	13154877	+
GWHAAZE00000008	exon	13155165	13155268	+
GWHAAZE00000008	exon	13155364	13155501	+
GWHAAZE00000008	exon	13155601	13155696	+
GWHAAZE00000008	exon	13156409	13156533	+
GWHAAZE00000008	exon	13156743	13156875	+
GWHAAZE00000008	exon	13157664	13157789	+
GWHAAZE00000008	exon	13157877	13157991	+
GWHAAZE00000008	exon	13158708	13159170	+
GWHAAZE00000008	CDS	13151756	13151881	+
GWHAAZE00000008	CDS	13154366	13154452	+
GWHAAZE00000008	CDS	13154534	13154677	+
GWHAAZE00000008	CDS	13154769	13154877	+
GWHAAZE00000008	CDS	13155165	13155268	+
GWHAAZE00000008	CDS	13155364	13155501	+
GWHAAZE00000008	CDS	13155601	13155696	+
GWHAAZE00000008	CDS	13156409	13156533	+
GWHAAZE00000008	CDS	13156743	13156875	+
GWHAAZE00000008	CDS	13157664	13157789	+
GWHAAZE00000008	CDS	13157877	13157991	+
GWHAAZE00000008	CDS	13158708	13159072	+
GWHAAZE00000008	three_prime_UTR	13159073	13159170	+

Transcript Sequence
>GWHTAAZE027015 ATGAGTATCGTACCTAAAGAAACGGTCGAGGTAATAGCACAAAGCATTGGAATTAACAACTTGTCTCAAGATGCCGCACTTGCTCTTGCTCCTGATGTGGAGTATCGTATGCGCGAGATAATGCAGGAGGCAATCAAGTGCATGCGGCATTCAAAAAGAACTACATTGACAACAGATGATGTTGACAGTGCACTCAACTTGAGAAATGTTGAGCTGGATCTTAATACTTCTGTTTTTGTAATATTGTCGCTTCAGCCAATCTATGGATTCGCCTCTGGTGATCCTTTGCGGTTCAAAAGAGCTCTTGGCCACAAGGATTTGTTTTACGTTGATGACAAAGATGTGGATTTTCAAGATGTGATTGAAGCTCCTCTACCTAAAGCACCACTAGACACTACAATTGTTTGTCACTGGTTGGCTATTGAAGGCGTACAGCCTGCTATTCCTGAAAATGCCGCCGTGGAAGTTATTACTGCTCCTTCTGAGACTAAAAAGGCTGAGAAGAAAGATGACGAACTCCCTGTTGATATCAGATTACCTGTTAAACATATACTGTCTAGAGAGCTTCAGTTATACTTTAGCAAAATTACCGAGCTCGCCGTAAGCAGGTCTGATTCAGTCCTATTCAAGGAAGCGTTAGTGAGTTTGGCCACAGATTCGGGACTTCATCCTCTTGTTCCCTATTTCACATGCTTTATTGCAGATGAGGTTTCTCGTGGTTTGAGTGATTTTTCCCTGCTGTTTGCTTTGATGCGTGTTGTTTGGAGTCTTCTTCAGAATCCACACATACACGTAGAACCTTATCTACATCAGTTAATGCCATCGGTTGTTACCTGCCTTGTTGGAAAAAGATTAGGAAGTCGATTTGCAGACAATCACTGGGAACTTAGGGACTTCACTGCAAAGTTGGTTGCCTCTATTTGTAAAAGGTTTGCGCATGTTTATAATAGTCTCCAGACACGTTTGACGAAAACATTGGGCAGTGCATTTACGGATACAAAAAGAGCAATTACTCAGCATTATGGTGCTATTCAAGGATTAGCAGCTCTTGGACCCAACGTGGTTCGCCTTCTAATACTGCCAAATCTTGAGGAATACCTAAAACTTCTTGAACCAGAGATGCTTCTCGAGACGCAAAAGAATGAGATGAAAAGGCATGAAGCTTGGCGGGTTTATGGGGCCTTGTTGCGTGCTGCTGGTTACTGCATATATGATCGTCTCAAGATGTTTCCACCTTTACCGTCCCCTCCTGCACATACTGTCTGGAGGACCAACAGAAGGGTTATTACTACAAGTCCAACAAATAAACGCAAGGCAAGAGCGGAGGACTTGGAGCGACAGCCTCCCCCTAAAAGAGTTGAGACGGATGGCCCTATGCTTGTGGAGCCAAACCACTCCTTATCATCTGACCCACTGGGAGAAATAGGCACTTCTAATGTGGCCCCATCGTCTATTTCTAGGCAGGAAGCAAACGAGAGTGTTAAAGGAGGGAGAGGGCTTAGAGAGACAGGAGATAAAAATAAAGCTTCGTTGAGGATGTCAGCGGTGCTGAACCAGGTTTGGAAGGAAGACCTTAAATCTGGGCATCTGCTTGTATCATTGTTTGAGCTGTTTGGTGACCGCATTTTCTCCTTCATTCCCACTCCCGAAATGTCTTTGTTTTTGTAATTATCTTAGGACAATTCAACTTCTTGTATTAGTTTAGTGTAATACTCCATTTACCCCAAAAAGTTAAAATGTAAACAATATTTGATTTGTATACACCA

Network for GWHGAAZE026981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02969.18	TAF	1	65	9.70E-32
PF07571.14	TAF6_C	276	363	7.90E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03131	TAF6	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006352	biological_process	DNA-templated transcription, initiation
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter
GO:0046982	molecular_function	protein heterodimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.717
	SRR3591706	second leaf	10.531
	SRR3591707	mature leaf	8.933
	SRR3591708	Shoot apex	15.550
	SRR3591709	Stem	13.061
	SRR3591710	White floral bud	12.400
	SRR3591711	White flower	14.905
	SRR3591712	Green floral bud	10.497
	SRR3591713	Yellow flower	16.076
SRP173429	SRR8316895	Juvenile bud stage	9.778
	SRR8316896	Juvenile bud stage	11.369
	SRR8316897	Juvenile bud stage	6.434
	SRR8316894	Third green stage	5.008
	SRR8316900	Third green stage	14.344
	SRR8316901	Third green stage	12.440
	SRR8316898	Complete white stage	3.551
	SRR8316899	Complete white stage	15.558
	SRR8316903	Complete white stage	5.943
	SRR8316902	Silver flowering stage	5.605
	SRR8316904	Silver flowering stage	6.425
	SRR8316905	Silver flowering stage	3.301
	SRR8316906	Gold flowering stage	15.222
	SRR8316907	Gold flowering stage	14.192
	SRR8316908	Gold flowering stage	14.778
SRP132670	SRR6706286	Control	10.044
	SRR6706287	Light intensity 50%	9.452
	SRR6706288	Light intensity 20%	11.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.945
	CNS0095593	Slightly white alabastrum(diploid) 2	9.069
	CNS0095594	Slightly white alabastrum(diploid) 3	11.275
	CNS0095595	Whole white alabastrum(diploid) 2	6.826
	CNS0095596	Whole white alabastrum(diploid) 3	7.062
	CNS0095597	Whole white alabastrum(diploid) 4	7.551
	CNS0095598	Silvery flower (diploied) 1	13.446
	CNS0095599	Silvery flower (diploied) 2	10.459
	CNS0095600	Silvery flower (diploied) 3	9.395
	CNS0095601	Golden flower (diploid) 1	11.075
	CNS0095602	Golden flower (diploid) 2	10.279
	CNS0095603	Golden flower (diploid) 3	10.014
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.200
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.769
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.287
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.594
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.588
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.947
	CNS0095610	Silvery flower (tetraploid) 1	12.776
	CNS0095611	Silvery flower (tetraploid) 2	13.434
	CNS0095612	Silvery flower (tetraploid) 3	10.302
	CNS0095613	Golden flower (tetraploid) 1	9.598
	CNS0095614	Golden flower (tetraploid) 2	12.421
	CNS0095615	Golden flower (tetraploid) 3	10.119
CRA001975	CRR073297	Stem 1	11.697
	CRR073298	Stem 2	9.440
	CRR073299	Stem 3	6.983
	CRR073300	Leaf 1	10.468
	CRR073301	Leaf 2	10.110
	CRR073302	Leaf 3	8.586
	CRR073303	Juvenile bud 1	7.454
	CRR073304	Juvenile bud 2	7.308
	CRR073305	Juvenile bud 3	8.006
	CRR073306	Third green 1	2.952
	CRR073307	Third green 2	2.162
	CRR073308	Third green 3	3.821
	CRR073309	Second white 1	4.779
	CRR073310	Second white 2	6.354
	CRR073311	Second white 3	7.276
	CRR073312	Silver flowering 1	5.074
	CRR073313	Silver flowering 2	6.318
	CRR073314	Silver flowering 3	4.883
	CRR073315	Gold flowering 1	5.934
	CRR073316	Gold flowering 2	12.792
	CRR073317	Gold flowering 3	4.831
	CRR073318	Tawny withering 1	6.345
	CRR073319	Tawny withering 2	8.229
	CRR073320	Tawny withering 3	6.766