Gene detail

Detail information of GWHGAAZE026985

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009785666.1	0	PREDICTED: BTB/POZ domain-containing protein At2g04740 [Nicotiana sylvestris]
COG	YP_004577283.1	0.000001	Ankyrin
Swissprot	tr\|Q9SJ85\|Y2474_ARATH	2E-167	BTB/POZ domain-containing protein At2g04740
trEMBL	tr\|A0A068TX65\|A0A068TX65_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP00890.1}
TAIR10	AT2G04740.1	1E-133	ankyrin repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13250485	13253137	+
GWHAAZE00000008	mRNA	13250485	13253137	+
GWHAAZE00000008	exon	13250485	13250814	+
GWHAAZE00000008	exon	13251303	13251441	+
GWHAAZE00000008	exon	13252656	13253137	+
GWHAAZE00000008	CDS	13250485	13250814	+
GWHAAZE00000008	CDS	13251303	13251441	+
GWHAAZE00000008	CDS	13252656	13253137	+

Transcript Sequence
>GWHTAAZE027019 ATGGACAACAACACCAAATACAGAACCATGTCCGATTTGGACGACATCGACCTCCAACCGGAAGACTTTGCCTCCTCAATCCCCCTAAAAAAGGTCCCTTACGGCGATGTTTTTGAGGCCTCCCGTGCCGGCGACGTCGACCGGCTCCGGTACCTATTAGAGTCCGGCGTCAACGTCAATGCTCGGGATCAATGGGACTCGGCTTCTCTTTACTACGCTTGCCTAGCCGGTCACCTCGATGCGGCGAGGATGTTGCTGGAGAACGGAGCTATTTGCTCCGAGCATACGTTTGACGGTGATCGCTGCCACTATGCTGCCTTGAATTTGAAGGTTAGGAAGTTGTTGAAAGCGTTTGAAGCTCGACCACCGCCGTTGGGACCGTTGCAGTCAGCATTGAGGGAGATTTTCTTGGGGTGTTTAGCTAATAGGGGTTTCTTCGAGCAAATGGAAAGCCAATCTGAGCTTCCAGGTAATTCATCCAATGGAGGATCCAGTTCTGCTTACTTCCCTCCAGATGTCGTATTTTACGTGCAAGGAAGGCCAATTGAAGCTCACAGAGTCATCTTGAGTGCTCGGTCACCTTTCTTCAAGAAAAAATTCGAGACTGATTGGAAGGATCGTAAGGATATAAGATTCTCAAGGGAAAAGTTGTCCTACCCTGCTCTATACAGCCTTTTCCACTTCTTCTATTCTGATAGACTTGAAATTGCAGTAGATGACATGGAGGATCTTGTAAGAATTTGCAAAGTTTGCAAGTGTGAATCCCTACAAAGGGTCCTTGAGAAGGAATTGATTCATCAAAAGTACGCGGATTACAAAGCAATTAGAGATGTGGACAACTCTCAGAAACGGTTTATCTTGCAGGGTCTTTCTCTTCCTGAAGAAGACCGTCTCCCTGCTTCCTTGCATAGAATCCTTCTTAGTGCTCTCACCAATTCAACCAAGACCTAA

Network for GWHGAAZE026985

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13637.7	Ank_4	39	86	6.10E-07
PF00651.32	BTB	171	267	4.70E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.025
	SRR3591706	second leaf	12.402
	SRR3591707	mature leaf	11.442
	SRR3591708	Shoot apex	17.225
	SRR3591709	Stem	19.094
	SRR3591710	White floral bud	25.796
	SRR3591711	White flower	28.868
	SRR3591712	Green floral bud	24.009
	SRR3591713	Yellow flower	25.645
SRP173429	SRR8316895	Juvenile bud stage	19.903
	SRR8316896	Juvenile bud stage	28.178
	SRR8316897	Juvenile bud stage	15.666
	SRR8316894	Third green stage	12.880
	SRR8316900	Third green stage	30.815
	SRR8316901	Third green stage	26.709
	SRR8316898	Complete white stage	10.093
	SRR8316899	Complete white stage	32.727
	SRR8316903	Complete white stage	17.365
	SRR8316902	Silver flowering stage	8.906
	SRR8316904	Silver flowering stage	14.046
	SRR8316905	Silver flowering stage	6.561
	SRR8316906	Gold flowering stage	20.640
	SRR8316907	Gold flowering stage	16.257
	SRR8316908	Gold flowering stage	18.144
SRP132670	SRR6706286	Control	18.176
	SRR6706287	Light intensity 50%	20.386
	SRR6706288	Light intensity 20%	19.107
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.670
	CNS0095593	Slightly white alabastrum(diploid) 2	13.986
	CNS0095594	Slightly white alabastrum(diploid) 3	13.115
	CNS0095595	Whole white alabastrum(diploid) 2	12.017
	CNS0095596	Whole white alabastrum(diploid) 3	12.302
	CNS0095597	Whole white alabastrum(diploid) 4	14.360
	CNS0095598	Silvery flower (diploied) 1	19.171
	CNS0095599	Silvery flower (diploied) 2	14.339
	CNS0095600	Silvery flower (diploied) 3	28.093
	CNS0095601	Golden flower (diploid) 1	12.973
	CNS0095602	Golden flower (diploid) 2	24.694
	CNS0095603	Golden flower (diploid) 3	29.558
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.440
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.806
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.697
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.965
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.696
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.277
	CNS0095610	Silvery flower (tetraploid) 1	23.959
	CNS0095611	Silvery flower (tetraploid) 2	32.234
	CNS0095612	Silvery flower (tetraploid) 3	30.273
	CNS0095613	Golden flower (tetraploid) 1	11.135
	CNS0095614	Golden flower (tetraploid) 2	20.483
	CNS0095615	Golden flower (tetraploid) 3	24.190
CRA001975	CRR073297	Stem 1	25.130
	CRR073298	Stem 2	22.506
	CRR073299	Stem 3	21.018
	CRR073300	Leaf 1	28.254
	CRR073301	Leaf 2	23.238
	CRR073302	Leaf 3	22.560
	CRR073303	Juvenile bud 1	18.564
	CRR073304	Juvenile bud 2	22.718
	CRR073305	Juvenile bud 3	24.233
	CRR073306	Third green 1	17.551
	CRR073307	Third green 2	12.252
	CRR073308	Third green 3	13.551
	CRR073309	Second white 1	16.156
	CRR073310	Second white 2	16.581
	CRR073311	Second white 3	17.749
	CRR073312	Silver flowering 1	11.905
	CRR073313	Silver flowering 2	12.493
	CRR073314	Silver flowering 3	11.966
	CRR073315	Gold flowering 1	10.065
	CRR073316	Gold flowering 2	16.926
	CRR073317	Gold flowering 3	8.877
	CRR073318	Tawny withering 1	17.566
	CRR073319	Tawny withering 2	13.505
	CRR073320	Tawny withering 3	15.172