Gene detail

Detail information of GWHGAAZE026992

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010040513.1	5.4892E-178	PREDICTED: exopolygalacturonase-like [Eucalyptus grandis]
COG	YP_003391696.1	5E-27	glycoside hydrolase family 28
Swissprot	tr\|Q05967\|PGLR_TOBAC	3E-166	Polygalacturonase (Precursor)
trEMBL	tr\|A0A058ZUL9\|A0A058ZUL9_EUCGR	2E-178	Uncharacterized protein {ECO:0000313\|EMBL:KCW45154.1}
TAIR10	AT3G07820.1	6E-120	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13304469	13306048	+
GWHAAZE00000008	mRNA	13304469	13306048	+
GWHAAZE00000008	exon	13304469	13304596	+
GWHAAZE00000008	exon	13304735	13305046	+
GWHAAZE00000008	exon	13305164	13305682	+
GWHAAZE00000008	exon	13305770	13306048	+
GWHAAZE00000008	five_prime_UTR	13304469	13304473	+
GWHAAZE00000008	CDS	13304474	13304596	+
GWHAAZE00000008	CDS	13304735	13305046	+
GWHAAZE00000008	CDS	13305164	13305682	+
GWHAAZE00000008	CDS	13305770	13306009	+
GWHAAZE00000008	three_prime_UTR	13306010	13306048	+

Transcript Sequence
>GWHTAAZE027026 TGGGTATGAACATTAGCAATACATCAACATTCTTGCTGTTGTTGCTAGCGCTAGAAGTATCAATTGCTGTTGATCTTGACGTGACAAAATTTGGTGCAAAACTCACTGGCGATTCAGATATGAGTCAGGCTATATTGAGTTCTTGGAAAGAAGCATGTGCGTCCGAAGCTCCAAGTACAATCACAATTCCAAAAGGTACATTTTTAATGAATGCAGTGAGTCTTGATGGTCCATGCAAGGGTCCCATACATCTCCAGATACAAGGGACAATAAAAGCATCACCGGATCCAAGCAAATTCAGCGGTGATGCAGAATGGATCACAATCCAACATGTTGAAGATTTCACAATGTCTGGTGGTGGCACTCTTGATGCCCAAGGTGCCATCGCTTGGAAACGAAATGATTGCCAAAAAACTGGCAAATGTTCCAAACTTCCCACTACATTGAGCCTTAACTTCCTCACCGATGCAAAGATTCAAGACATAACTTCTCTCGACAGTAAATTGTTCCACGTTAATGTGTTGGGATGTAAGAACCTGACTTTTGAACGCTTCACCATTAGTGCCCCAGGAGATAGCCCGAACACTGATGGAATCCACATAGGACGTTCAAACGGAGTCAGTATCTTGGACTCCAACATAAAAACCGGAGACGATTGCGTATCAATTGGCGATGGGAGTCAACAGGTTACTGTGGAAAAGGTCACTTGTGGTCCCGGTCACGGCATCAGCGTGGGAAGTCTTGGAAAGTATGAAAATGAAGAGCCAGTGGTCGGAATCTTTGTTAGGAACTGCACGCTGACCGATACAATGAACGGCGTGCGAGTGAAAACATGGCCAAATTCTCCTACTGCAGGAGAAGCCTCTGATATGCACTTCGAAGATATTATCATGAATAATGTTGGGAATCCTGTCCTCATTGATCAGGAATATTGTCCATATAATCAATGCACTAAACAGGTTGCTTCACGCGTTAAGATCAGCAAAGTTAGTTTCAAGGATATTAGGGGAACTTCTTCGAGTCAGCTTGCGGTTAAGATTGTTTGCAGTAAGAGCCTACCATGTGAAAACGTGCAAATCGGTAACATCGACTTAGCATACAGTGGAAAGGAAGGCCCTGCCACTTCCGAGTGTGCGAATGTTAAGCCAGCTTTCTCCGGCAAACAGAATCCGCCCACATGTTCTCGATCACCTGCCTAAAGCACTGGACATATCATCTTGGAAATCAATTCGTTTTTC

Network for GWHGAAZE026992

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	51	381	6.90E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.734
	SRR3591706	second leaf	0.075
	SRR3591707	mature leaf	0.354
	SRR3591708	Shoot apex	1.412
	SRR3591709	Stem	9.832
	SRR3591710	White floral bud	1001.007
	SRR3591711	White flower	25.253
	SRR3591712	Green floral bud	1260.277
	SRR3591713	Yellow flower	10.054
SRP173429	SRR8316895	Juvenile bud stage	174.217
	SRR8316896	Juvenile bud stage	514.703
	SRR8316897	Juvenile bud stage	260.467
	SRR8316894	Third green stage	185.230
	SRR8316900	Third green stage	666.070
	SRR8316901	Third green stage	770.372
	SRR8316898	Complete white stage	0.657
	SRR8316899	Complete white stage	6.426
	SRR8316903	Complete white stage	1.060
	SRR8316902	Silver flowering stage	9.671
	SRR8316904	Silver flowering stage	19.755
	SRR8316905	Silver flowering stage	5.219
	SRR8316906	Gold flowering stage	3.519
	SRR8316907	Gold flowering stage	0.769
	SRR8316908	Gold flowering stage	0.541
SRP132670	SRR6706286	Control	291.219
	SRR6706287	Light intensity 50%	282.984
	SRR6706288	Light intensity 20%	269.176
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1171.080
	CNS0095593	Slightly white alabastrum(diploid) 2	921.551
	CNS0095594	Slightly white alabastrum(diploid) 3	1724.610
	CNS0095595	Whole white alabastrum(diploid) 2	2020.063
	CNS0095596	Whole white alabastrum(diploid) 3	2371.117
	CNS0095597	Whole white alabastrum(diploid) 4	2656.832
	CNS0095598	Silvery flower (diploied) 1	41.794
	CNS0095599	Silvery flower (diploied) 2	160.537
	CNS0095600	Silvery flower (diploied) 3	36.758
	CNS0095601	Golden flower (diploid) 1	55.889
	CNS0095602	Golden flower (diploid) 2	33.467
	CNS0095603	Golden flower (diploid) 3	30.417
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1636.599
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1988.279
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.609
	CNS0095607	Whole white alabastrum(tetraploid) 1	2996.732
	CNS0095608	Whole white alabastrum(tetraploid) 2	3228.127
	CNS0095609	Whole white alabastrum(tetraploid) 3	1330.251
	CNS0095610	Silvery flower (tetraploid) 1	16.979
	CNS0095611	Silvery flower (tetraploid) 2	93.219
	CNS0095612	Silvery flower (tetraploid) 3	218.746
	CNS0095613	Golden flower (tetraploid) 1	40.254
	CNS0095614	Golden flower (tetraploid) 2	8.249
	CNS0095615	Golden flower (tetraploid) 3	123.212
CRA001975	CRR073297	Stem 1	241.279
	CRR073298	Stem 2	237.472
	CRR073299	Stem 3	114.414
	CRR073300	Leaf 1	697.292
	CRR073301	Leaf 2	460.739
	CRR073302	Leaf 3	273.494
	CRR073303	Juvenile bud 1	452.985
	CRR073304	Juvenile bud 2	368.652
	CRR073305	Juvenile bud 3	43.316
	CRR073306	Third green 1	312.553
	CRR073307	Third green 2	467.730
	CRR073308	Third green 3	322.061
	CRR073309	Second white 1	20.618
	CRR073310	Second white 2	54.881
	CRR073311	Second white 3	59.923
	CRR073312	Silver flowering 1	288.757
	CRR073313	Silver flowering 2	243.968
	CRR073314	Silver flowering 3	172.313
	CRR073315	Gold flowering 1	334.651
	CRR073316	Gold flowering 2	68.666
	CRR073317	Gold flowering 3	164.741
	CRR073318	Tawny withering 1	285.343
	CRR073319	Tawny withering 2	269.158
	CRR073320	Tawny withering 3	256.571