Gene detail

Detail information of GWHGAAZE026997

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007215836.1	9.4343E-127	hypothetical protein PRUPE_ppa010211mg [Prunus persica]
COG	YP_003121215.1	2E-32	thymidine kinase
Swissprot	tr\|O81263\|KITH_ORYSJ	6E-109	Thymidine kinase
trEMBL	tr\|M5XD79\|M5XD79_PRUPE	4E-127	Thymidine kinase {ECO:0000256\|RuleBase:RU000544}
TAIR10	AT3G07800.1	2E-84	Thymidine kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13362542	13365285	+
GWHAAZE00000008	mRNA	13362542	13365285	+
GWHAAZE00000008	exon	13362542	13362702	+
GWHAAZE00000008	exon	13363248	13363392	+
GWHAAZE00000008	exon	13364519	13364640	+
GWHAAZE00000008	exon	13364935	13365285	+
GWHAAZE00000008	CDS	13362542	13362702	+
GWHAAZE00000008	CDS	13363248	13363392	+
GWHAAZE00000008	CDS	13364519	13364640	+
GWHAAZE00000008	CDS	13364935	13365226	+
GWHAAZE00000008	three_prime_UTR	13365227	13365285	+

Transcript Sequence
>GWHTAAZE027031 ATGTCCTGTTCCTCTTTTAAATCCCAAATATCTTCCCTCCCCGACCCAATTGTCCCCACTCATCGCCGTTCCGGCGAGATCCATGTCATTATAGGCCCCATGTTTGCCGGGAAAACTACTTCTCTTCTTCATCGTATTAAATCTGAAGGCAACAACGGCAGACATGTTGCAATGATAAAGTCAAGCAAGGATACACGGTACGCAATAGATTCAGTTGTGACACATGATGGGACAAAATTTCCATGTTGGACATTGCAGGATCTTTTGTCTTTCAAGCAAAATTTTGGAGCTGATGCTTATGATGAGTTGGATGTGATTGGAATTGATGAAGCTCAATTCTTTGACGACCTTTACGATTTCTGCTGCAGAGCAGCTGACCATGATGGTAAAACTGTAATAGTTGCTGGCCTAGATGGTGATTACTTGAGAAGGAGATTTGGTTCTGTGCTCGATGTAATACCTCTTGCTGACACTGTAACAAAATTGACTGCTCGATGTGAATTATGTGGCAAACGTGCCTTTTTCACCTTAAGGAAGACAGACGAGACAAAGACAGAGCTCATAGGTGGGGCTGATATGTACATGCCGGTTTGTCGGCAGCATTATGCAAATGGACAAGCTGTCATTGAAGCTACAAGAGTAGTTCTCAAATCTCATCATGAAGTTCAGAATGATCAAGCTCTCATTGATCAGTCCCAGGAGGTAGCTGCAGTTAATTAGTAATATCCCTAAGGTCCTAACTTGTTTACAATAATTTTTCATTTTTTACTCTGTGCTGT

Network for GWHGAAZE026997

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00265.19	TK	25	202	1.10E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00857	tdk, TK	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0004797	molecular_function	thymidine kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.659
	SRR3591706	second leaf	6.584
	SRR3591707	mature leaf	3.578
	SRR3591708	Shoot apex	46.391
	SRR3591709	Stem	13.751
	SRR3591710	White floral bud	4.019
	SRR3591711	White flower	3.235
	SRR3591712	Green floral bud	7.055
	SRR3591713	Yellow flower	2.959
SRP173429	SRR8316895	Juvenile bud stage	6.979
	SRR8316896	Juvenile bud stage	7.202
	SRR8316897	Juvenile bud stage	5.167
	SRR8316894	Third green stage	2.436
	SRR8316900	Third green stage	3.032
	SRR8316901	Third green stage	1.917
	SRR8316898	Complete white stage	0.263
	SRR8316899	Complete white stage	2.658
	SRR8316903	Complete white stage	0.746
	SRR8316902	Silver flowering stage	0.327
	SRR8316904	Silver flowering stage	0.376
	SRR8316905	Silver flowering stage	0.108
	SRR8316906	Gold flowering stage	1.053
	SRR8316907	Gold flowering stage	0.519
	SRR8316908	Gold flowering stage	3.860
SRP132670	SRR6706286	Control	2.153
	SRR6706287	Light intensity 50%	2.240
	SRR6706288	Light intensity 20%	3.224
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.229
	CNS0095593	Slightly white alabastrum(diploid) 2	5.652
	CNS0095594	Slightly white alabastrum(diploid) 3	7.994
	CNS0095595	Whole white alabastrum(diploid) 2	1.017
	CNS0095596	Whole white alabastrum(diploid) 3	0.848
	CNS0095597	Whole white alabastrum(diploid) 4	1.343
	CNS0095598	Silvery flower (diploied) 1	3.345
	CNS0095599	Silvery flower (diploied) 2	4.290
	CNS0095600	Silvery flower (diploied) 3	1.018
	CNS0095601	Golden flower (diploid) 1	2.488
	CNS0095602	Golden flower (diploid) 2	0.994
	CNS0095603	Golden flower (diploid) 3	1.119
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.159
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.219
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.659
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.123
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.781
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.840
	CNS0095610	Silvery flower (tetraploid) 1	0.358
	CNS0095611	Silvery flower (tetraploid) 2	0.728
	CNS0095612	Silvery flower (tetraploid) 3	0.378
	CNS0095613	Golden flower (tetraploid) 1	0.930
	CNS0095614	Golden flower (tetraploid) 2	0.521
	CNS0095615	Golden flower (tetraploid) 3	0.475
CRA001975	CRR073297	Stem 1	9.048
	CRR073298	Stem 2	5.524
	CRR073299	Stem 3	10.629
	CRR073300	Leaf 1	1.270
	CRR073301	Leaf 2	1.236
	CRR073302	Leaf 3	1.827
	CRR073303	Juvenile bud 1	2.172
	CRR073304	Juvenile bud 2	0.644
	CRR073305	Juvenile bud 3	0.899
	CRR073306	Third green 1	0.249
	CRR073307	Third green 2	0.082
	CRR073308	Third green 3	0.093
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.369
	CRR073311	Second white 3	0.069
	CRR073312	Silver flowering 1	0.243
	CRR073313	Silver flowering 2	0.040
	CRR073314	Silver flowering 3	0.259
	CRR073315	Gold flowering 1	0.474
	CRR073316	Gold flowering 2	0.951
	CRR073317	Gold flowering 3	0.641
	CRR073318	Tawny withering 1	14.729
	CRR073319	Tawny withering 2	12.686
	CRR073320	Tawny withering 3	19.053