Gene detail

Detail information of GWHGAAZE026998

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009605529.1	4.12861E-82	PREDICTED: WRKY transcription factor 1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q93WV0\|WRK20_ARATH	4E-48	Probable WRKY transcription factor 20
trEMBL	tr\|F6HHL8\|F6HHL8_VITVI	3E-80	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51714.1}
TAIR10	AT4G26640.2	1E-43	WRKY family transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13389731	13392763	+
GWHAAZE00000008	mRNA	13389731	13392763	+
GWHAAZE00000008	exon	13389731	13390502	+
GWHAAZE00000008	exon	13390872	13391037	+
GWHAAZE00000008	exon	13391140	13391301	+
GWHAAZE00000008	exon	13392622	13392763	+
GWHAAZE00000008	CDS	13389731	13390502	+
GWHAAZE00000008	CDS	13390872	13391037	+
GWHAAZE00000008	CDS	13391140	13391301	+
GWHAAZE00000008	CDS	13392622	13392763	+

Transcript Sequence
>GWHTAAZE027032 ATGGTTACCTCAAAGGAAGCTGGGTCATACGAAATTCATTCTGATCAATTGCAGAATACCGAGAACCCCAATTCTGGATTAGATGAATCAGCATCCAATAAGAAAGGAAGCTCTCTGCCATCATCACCTGATAAAGAGATAGATAAATTGCTGCAGAGACAAAACCCTAATTCTGAGACACCTGTATCACCATCCAGTCAAGAAGGAAGTACACCTGCTGTGGTGCCTGAGAAAGAAGCAAATAATTTGCAGCAGAAACAGAATGTGAATACTGGGATTCATGCATCAGAATCCAATCAAGAAGGTAGAACTCTTTCCATAGTGCCCGCAAATGCGTCGAATAGTTTGCAGCAAAAACCGGGCCTTGTTAATTTGGTTCCTGCATCAGAATTGAATCAAGAAAAGTTCACAATTTCCATAAGACCCGAGAAAGCGTTAGACAAATTGCCACTGAGAAGGAACCCTAGTCAGGAAGCAAAATCTCCCACTATAATACCCGACAAACCATCAGAAGATGGATATAACTGGAGAAAATATGGCCAGAAGTTCGTTAGAGGAAATGAATTTATTCGGAGCTATTACAAGTGTACATCCCCTAATTGCCCAGCGAAAAAGCAAGTGGAACGATCACATGATGGGCATATTACAGATATTAAGTACCTCCGAAAGCATGAACATCCTAAACCTCAACGTAGTCCACCGGTAGCTGCTAGCTTTGTACTGCCTATCCAAGTAAGAAAACCTGAAGCCGCTTCTTTGACCGTATCTGAAGACAAGTCAACCAATGCACATTTCGAACCATCTCATCTTATTGAGCCAACAGAGACTCCTCAGCGCACGATTACTGTAGCACATGATATTGCGGAGGTTGATGCTTCACAGTCAAACAGAACTAGAGATGAGGTTGACAACGACGAAGATCACGACTTGAAGAGACAGAAGAGAGACATTTCTAGTGTCAATGATACTCTGGTGAACAAGATTAATGATGATCCACGAGTTGTTCAGACTATGAGTGAGGTTGATATAGTGAATGATGGCTACCGATGGCGCAAATATGGGCAGAAGTTAGTAAAAGGCAATCCAAATCCAAGGTACATTGACTTGTACAAATGCTTCAATGTTGGTATCGATCGACGTGAATTGAGATGCTTGTACACTGGAAGTGTTATAGAGAGGAGAGAAGTGCGGCATGGGGCGCAGTTATCATGCCTCAATTTCTGTTGGAACCAATGTCTCTAA

Network for GWHGAAZE026998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	171	227	3.70E-22
PF03106.16	WRKY	345	374	4.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
K18834	WRKY1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.135
	SRR3591706	second leaf	24.873
	SRR3591707	mature leaf	29.074
	SRR3591708	Shoot apex	35.332
	SRR3591709	Stem	36.486
	SRR3591710	White floral bud	30.608
	SRR3591711	White flower	34.062
	SRR3591712	Green floral bud	26.475
	SRR3591713	Yellow flower	22.932
SRP173429	SRR8316895	Juvenile bud stage	19.398
	SRR8316896	Juvenile bud stage	24.420
	SRR8316897	Juvenile bud stage	11.115
	SRR8316894	Third green stage	10.739
	SRR8316900	Third green stage	23.574
	SRR8316901	Third green stage	23.731
	SRR8316898	Complete white stage	10.332
	SRR8316899	Complete white stage	43.760
	SRR8316903	Complete white stage	18.987
	SRR8316902	Silver flowering stage	12.198
	SRR8316904	Silver flowering stage	16.322
	SRR8316905	Silver flowering stage	7.602
	SRR8316906	Gold flowering stage	27.292
	SRR8316907	Gold flowering stage	22.797
	SRR8316908	Gold flowering stage	27.982
SRP132670	SRR6706286	Control	24.067
	SRR6706287	Light intensity 50%	22.113
	SRR6706288	Light intensity 20%	21.541
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.933
	CNS0095593	Slightly white alabastrum(diploid) 2	13.893
	CNS0095594	Slightly white alabastrum(diploid) 3	17.316
	CNS0095595	Whole white alabastrum(diploid) 2	13.268
	CNS0095596	Whole white alabastrum(diploid) 3	10.909
	CNS0095597	Whole white alabastrum(diploid) 4	10.236
	CNS0095598	Silvery flower (diploied) 1	19.974
	CNS0095599	Silvery flower (diploied) 2	18.815
	CNS0095600	Silvery flower (diploied) 3	31.456
	CNS0095601	Golden flower (diploid) 1	23.341
	CNS0095602	Golden flower (diploid) 2	34.122
	CNS0095603	Golden flower (diploid) 3	31.393
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.148
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.909
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.841
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.160
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.956
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.550
	CNS0095610	Silvery flower (tetraploid) 1	31.637
	CNS0095611	Silvery flower (tetraploid) 2	33.696
	CNS0095612	Silvery flower (tetraploid) 3	26.318
	CNS0095613	Golden flower (tetraploid) 1	17.610
	CNS0095614	Golden flower (tetraploid) 2	26.720
	CNS0095615	Golden flower (tetraploid) 3	30.492
CRA001975	CRR073297	Stem 1	27.577
	CRR073298	Stem 2	24.773
	CRR073299	Stem 3	25.495
	CRR073300	Leaf 1	26.951
	CRR073301	Leaf 2	24.097
	CRR073302	Leaf 3	21.125
	CRR073303	Juvenile bud 1	20.400
	CRR073304	Juvenile bud 2	16.372
	CRR073305	Juvenile bud 3	23.505
	CRR073306	Third green 1	7.991
	CRR073307	Third green 2	6.696
	CRR073308	Third green 3	10.585
	CRR073309	Second white 1	10.013
	CRR073310	Second white 2	11.872
	CRR073311	Second white 3	8.920
	CRR073312	Silver flowering 1	8.057
	CRR073313	Silver flowering 2	6.193
	CRR073314	Silver flowering 3	7.751
	CRR073315	Gold flowering 1	19.131
	CRR073316	Gold flowering 2	23.653
	CRR073317	Gold flowering 3	16.422
	CRR073318	Tawny withering 1	21.014
	CRR073319	Tawny withering 2	18.157
	CRR073320	Tawny withering 3	21.694