Gene detail

Detail information of GWHGAAZE027000

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002272218.1	PREDICTED: vacuolar protein-sorting-associated protein 11 homolog isoform X3 [Vitis vinifera]
Swissprot	tr\|Q9SJ40\|VPS11_ARATH	Vacuolar protein-sorting-associated protein 11 homolog
trEMBL	tr\|F6HHM1\|F6HHM1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51717.1}
TAIR10	AT2G05170.1	vacuolar protein sorting 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13409007	13414267	+
GWHAAZE00000008	mRNA	13409007	13414267	+
GWHAAZE00000008	exon	13409007	13409293	+
GWHAAZE00000008	exon	13410722	13410859	+
GWHAAZE00000008	exon	13411011	13411334	+
GWHAAZE00000008	exon	13411419	13413170	+
GWHAAZE00000008	exon	13413878	13414267	+
GWHAAZE00000008	five_prime_UTR	13409007	13409071	+
GWHAAZE00000008	CDS	13409072	13409293	+
GWHAAZE00000008	CDS	13410722	13410859	+
GWHAAZE00000008	CDS	13411011	13411334	+
GWHAAZE00000008	CDS	13411419	13413170	+
GWHAAZE00000008	CDS	13413878	13414267	+

Transcript Sequence
>GWHTAAZE027034 AAGCAAGATCGTTATGTAGAGAGATTTTTATTTGCATAAATTCTGTCCGTGTATTGGTCACAGAGATGTACCAGTGGAGGAAATTTGAATTCTTCGAAGAGAAATACGCCGGAAAATGCTCTGTTCCCGAGGAAATCACTGGCCAGATCGATTGCTGTTCCAGCGGAAGGGGAAAGATCGTCGTTGGATGTGACGATGGCACTGTCAGCCTCCTCGATCGAGGCTTGAAGTTCAATTATGGCTTCCAAGCTCACTCTTCCTCCGTTCTCTTCATTCAACAACTCAAGATATCTCCTCAGCAATCAGCTGTTTGCCTGAAGGTTTTTGACCTTGATAAGATGCAGCCAGAGGAGGGCCCAAGCACATCAAGTCCTGATTGTATTCAAATATTGAGAATATTCACTAATCAGTTTCCTGAAGCAAAGATAACGTCATTTTTAGTTCTAGAGGAAGCTCCACCGATATTACTCATAGCTGTTGGATTAGACAATGGCTGTATTTATTGCATCCAAGGAGATATTGCTCGCGAGCGCATCAAACGCTTCAAACTTCAAGTGGAAAATCATTTAGACAAAAGTCAATCTTCTATTACAGGTTTAGCATTCCGGGTAGATGGTCAAGCCCTTCAACTCTTTGTGGTTACTCCAACTTCAGTGAGCTTGTTTAGCCTGCAGACTCAAACACCTACTCGCCAAACCATAGATCAGATTGGATGTGATGTTAATACTGTTGCAATGAGTGATCGCTTGGAACTGATAATTGGTCGACCTGAGGCAATCTATTTCTATGAAGTTGATGGCAGAGGTCCTTGTTGGGCCTTTGAGGGAGAAAAGAGATTGCTCGGATGGTTCCGTGGATATCTTTTATGTGTTGTCGCAGATCAAAGAAATGGCAATAATACTTTCAATGTTTATGACCTGAAGAACCGTTTAATTGCTCATAGTATAATTGTTAAAGAAGTTTCTCACATGCTTTGCGAGTGGGGTAACATAATACTTATAATGGCGGACAAATCAGCTCTATGCATTGGGGAGAAGGATATGGAAAGCAAGTTAGATATGCTTTTTAGGAAAAATCTTTATACGGTAGCTATCAATATCGTCCAAACTCAGCAAGCTGATGCTGCTGCAACTGCTGAAGTGCTAAGGAAGTATGGGGATCACTTATACAGCAAACAAGACTATGATGAAGCTATGGCTCAGTACATCCACACCATTGGTCACCTCGAACCTTCATATGTGATCCAAAAGTTTCTTGATGCACAAAGAATCTACAACCTTACCAATTACTTGGAAAGGCTGCATGAGAAAGGGCTTGCTTCTAAAGATCACACCACTCTTCTGTTAAATTGTTACACCAAATTGAAAGATGTCGATAAGCTGAATGTTTTCATTAAAAGTGAAGAAGGCATTGGGGAGCATAAATTCGACGTGGAAACTGCGATAAGGGTCTGTCGAGCTGCCAATTATCATGAGCATGCAATGTATGTTGCTAAGAAGGCTGGTAAGCATGAATGGTACTTGAAGATCTTACTTGAAGACCTTGATAGATACGACGAAGCATTGCAATATATTTCTAGCCTTGAACCTAGTCAAGCTGGGGTGACGGTAAAAGAGTATGGGAAGATTCTCATAGAGCACAAGCCGGTGGAAACAATCGAAATACTGCTGAGGCTTTGCACTGAGGAAGGAGAATCGTCCAAGAGAGGCACCTCATATGTATCCATGTTGCCATCACCTGTTGATTTTCTTAACATCTTTATCCATTATCCGCAATCGCTTATGGATTTTCTCGAGAAATACGCTAATGTAGTCAAGGACTCGCCTGCTCAAGTGGAAATTCACAACACACTATTGGAACTATACTTGTCTGGGGACCTGAACTTTCCATCAATCTCGTTGATGAGCATTGGTGAAACTGATATTATCCAGTCAGAAAGGCCATCAAAAGCACAGTCTAATGGGAAATTAATTGCAGAACATGAAGATGCAAGCATGGAAAAGGATCGTCAAGCCAGACTCCAAAAGGGGCTCCACTTGCTTAAAAGTGGGTGGCCAAATGACCAAGAACAACCACTCTATGACGTTGATCTTGCTGTAATTCTTTGTGAAATGAATGGTTTCAGAGAAGGCATATTATTTCTTTATGAGAAGATGAAACTTTATAAGGAGGTGATTGCTTGCTACATGCAGGCTCATGACCATGAGGGTTTGCTTGCATGCTGCAAGAGACTTGGGGATTCGGGTCAGGGAGGTGATCCTTCTCTGTGGGCAGATCTATTGAAGTACTTTGGTGAACTTGGAGAAGAGTGCTCCAAAGAGGTTAAGGAAGTGTTGACTTATATTGAAAGGGATGACATCTTGCCTCCTATTATAGTTCTTCAGACTCTGTCCCGGAATCCATGCCTCACTCTCTCTGTCATCAAAGATTATATAGCTCGGAAGCTTGAACAGGAATCAAAGCTGATTGAAGAGGACCGACGTGCTATTGATAAGTATCAGGAAGAAACCTTGGCAATGAGAAAAGAAACCCAAGATCTTAGAACAAATGCAAGAATATTTCAGCTGAGCAAATGCACTGCTTGCACTTTCACTCTCGATCTCCCTGCAGTCCACTTTATGTGTATGCACTCGTTCCATCAGCGTTGCCTTGGTGACAACGAAAAAGAATGCCCCGAGTGTGCACCAGAATACAGATCCGTCATGGAAACAAAGAGAAGCTTAGAGCGAAATTCGAAAGACCAAGATCAGTTCTTCCAGCTAGTCAAGAGCTCAAAGGACGGTTTTTCCGTGATTGCCGAGTATTTCGGAAAGGGGATTATTAGCAAAACTACTACCAGTGGGCTCACTGGCGCTCTTAGATCGAGCGGTCCTTCTGGCAGTGGCTTTTGA

Network for GWHGAAZE027000

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00637.21	Clathrin	388	510	2.30E-13
PF17122.6	zf-C3H2C3	837	872	1.50E-06
PF12451.9	VPS11_C	877	919	1.20E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K20179	VPS11, PEP5	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.737
	SRR3591706	second leaf	16.235
	SRR3591707	mature leaf	16.234
	SRR3591708	Shoot apex	27.008
	SRR3591709	Stem	35.427
	SRR3591710	White floral bud	27.272
	SRR3591711	White flower	28.294
	SRR3591712	Green floral bud	41.491
	SRR3591713	Yellow flower	24.170
SRP173429	SRR8316895	Juvenile bud stage	20.623
	SRR8316896	Juvenile bud stage	33.409
	SRR8316897	Juvenile bud stage	16.308
	SRR8316894	Third green stage	13.396
	SRR8316900	Third green stage	39.147
	SRR8316901	Third green stage	34.610
	SRR8316898	Complete white stage	11.068
	SRR8316899	Complete white stage	31.513
	SRR8316903	Complete white stage	19.312
	SRR8316902	Silver flowering stage	9.847
	SRR8316904	Silver flowering stage	16.064
	SRR8316905	Silver flowering stage	7.227
	SRR8316906	Gold flowering stage	26.265
	SRR8316907	Gold flowering stage	20.973
	SRR8316908	Gold flowering stage	27.336
SRP132670	SRR6706286	Control	23.827
	SRR6706287	Light intensity 50%	26.141
	SRR6706288	Light intensity 20%	27.757
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.321
	CNS0095593	Slightly white alabastrum(diploid) 2	23.481
	CNS0095594	Slightly white alabastrum(diploid) 3	25.114
	CNS0095595	Whole white alabastrum(diploid) 2	23.988
	CNS0095596	Whole white alabastrum(diploid) 3	28.487
	CNS0095597	Whole white alabastrum(diploid) 4	20.370
	CNS0095598	Silvery flower (diploied) 1	19.475
	CNS0095599	Silvery flower (diploied) 2	18.877
	CNS0095600	Silvery flower (diploied) 3	40.078
	CNS0095601	Golden flower (diploid) 1	14.888
	CNS0095602	Golden flower (diploid) 2	36.884
	CNS0095603	Golden flower (diploid) 3	31.142
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.341
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.687
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.146
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.389
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.184
	CNS0095610	Silvery flower (tetraploid) 1	39.294
	CNS0095611	Silvery flower (tetraploid) 2	41.350
	CNS0095612	Silvery flower (tetraploid) 3	31.038
	CNS0095613	Golden flower (tetraploid) 1	19.123
	CNS0095614	Golden flower (tetraploid) 2	33.704
	CNS0095615	Golden flower (tetraploid) 3	28.853
CRA001975	CRR073297	Stem 1	30.981
	CRR073298	Stem 2	32.148
	CRR073299	Stem 3	25.399
	CRR073300	Leaf 1	34.995
	CRR073301	Leaf 2	32.061
	CRR073302	Leaf 3	29.495
	CRR073303	Juvenile bud 1	31.699
	CRR073304	Juvenile bud 2	26.061
	CRR073305	Juvenile bud 3	36.146
	CRR073306	Third green 1	11.517
	CRR073307	Third green 2	10.442
	CRR073308	Third green 3	13.929
	CRR073309	Second white 1	14.631
	CRR073310	Second white 2	14.656
	CRR073311	Second white 3	12.560
	CRR073312	Silver flowering 1	10.757
	CRR073313	Silver flowering 2	12.791
	CRR073314	Silver flowering 3	10.847
	CRR073315	Gold flowering 1	11.823
	CRR073316	Gold flowering 2	15.898
	CRR073317	Gold flowering 3	7.904
	CRR073318	Tawny withering 1	31.894
	CRR073319	Tawny withering 2	25.840
	CRR073320	Tawny withering 3	32.607