Gene detail

Detail information of GWHGAAZE027001

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003527514.1	3.8649E-167	PREDICTED: probable choline kinase 2-like isoform X1 [Glycine max]
COG	YP_007206764.1	0.0000001	choline kinase
Swissprot	tr\|Q8L518\|CK2_ARATH	4E-156	Probable choline kinase 2
trEMBL	tr\|K7KJX3\|K7KJX3_SOYBN	7E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G16363.2}
TAIR10	AT1G74320.1	4E-126	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13418774	13422371	+
GWHAAZE00000008	mRNA	13418774	13422371	+
GWHAAZE00000008	exon	13418774	13419121	+
GWHAAZE00000008	exon	13419221	13419341	+
GWHAAZE00000008	exon	13419767	13419921	+
GWHAAZE00000008	exon	13420034	13420151	+
GWHAAZE00000008	exon	13420630	13420725	+
GWHAAZE00000008	exon	13420801	13420848	+
GWHAAZE00000008	exon	13421491	13421591	+
GWHAAZE00000008	exon	13421850	13421975	+
GWHAAZE00000008	exon	13422342	13422371	+
GWHAAZE00000008	CDS	13418774	13419121	+
GWHAAZE00000008	CDS	13419221	13419341	+
GWHAAZE00000008	CDS	13419767	13419921	+
GWHAAZE00000008	CDS	13420034	13420151	+
GWHAAZE00000008	CDS	13420630	13420725	+
GWHAAZE00000008	CDS	13420801	13420848	+
GWHAAZE00000008	CDS	13421491	13421591	+
GWHAAZE00000008	CDS	13421850	13421975	+
GWHAAZE00000008	CDS	13422342	13422371	+

Transcript Sequence
>GWHTAAZE027035 ATGGGTTCTGTCAAAGGGATAGATAGTAAGGACAGTTGTCTACCAGCTGATGCAAAAAAGATTCTACAATCTTTGGCTTCTAGCTGGGATGATATAAAAGATTCAAATGCATTACAGGTGATCCCACTTAAGGGTGCTATGACCAATAAGGTCTACCAAATCAAGTGGCCGACAAAGAAAGAAAGCTCAAGAAAGGTATTAGTTAGGATCTATGGTGAGGGTGTGGAGATTTTCTTTGACCGAGAGAATGAGATCCGAACGTTTGAGTTCATGTCCAAGAAAGGGCAAGGACCTCGTCTACTAGGTCGGTTCTCTAATGGGCGAATTGAAGAATTCATTCGTGCACGGACACTATCAGCATCTGATCTACGCGATCCAGAGATATCTGCCCTGATAGCAGCTAAAACGAAGGAGTTTCATGATCTCAATATGCCTGGTCCAAAACCATATTGCTTTGGGATAGACTACGAAGCTGAGGCCTTTCACTTGAAAGCCATAGGGGGAGAAATATCAATATTGGAAAAGAATCTATCGGGGGATCATCAATGTGTAGGATTCTGCCACAACGATTTACAATATGGTAACATAATGATTGATGAGGAGACAAGATCAATAACCATTATTGATTACGAGTATGCTTGTTACAATCCCGTTGCCTTTGATATAGCAAATCACTTCTGTGAGATGGCTGCCAATTATCACACAGAAAACCCTCATATTTTGAACTACAGTAAATATCCCAAAAAGGGAGCTAATGTTAGTCTGAGACCTACAGCTCAACTTTCTAGCATCATTGTTTTAGAGTTGCTCACCTGCCCAGTTGCGCTGAACTGGCCAGGTTTGAAGGAGCGTCAAAGGTTTCTGCACATATATCTGAGTTGTTCAGGTGATAAACTCTGTAACCAGAAGGTGGAGCAGTTAGTTCAAGAAATCGAGAAGTACACCCTAGCAAGCCATCTGTTTTGGGGGTTATGGGGCATAATATCGGCACATGTTAATGCAATTGACTTCAATTACAAGGAATATGCGAGACAGAGGTTTCAACAATACTGGTTAAGGAAGCCTCAATTGTTGTTGGATTCTTCTGTTGCTGCTTCTGGTGGTGTGAAAACGGTAAGTGAGAATGCAAAGGGACGTCGTTGA

Network for GWHGAAZE027001

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01633.21	Choline_kinase	63	147	1.10E-27
PF01633.21	Choline_kinase	158	249	2.30E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14156	CHK	Metabolic pathways	map01100
K14156	CHK	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.022
	SRR3591706	second leaf	11.780
	SRR3591707	mature leaf	15.447
	SRR3591708	Shoot apex	19.344
	SRR3591709	Stem	25.513
	SRR3591710	White floral bud	22.081
	SRR3591711	White flower	29.654
	SRR3591712	Green floral bud	37.403
	SRR3591713	Yellow flower	28.207
SRP173429	SRR8316895	Juvenile bud stage	26.393
	SRR8316896	Juvenile bud stage	41.634
	SRR8316897	Juvenile bud stage	20.085
	SRR8316894	Third green stage	16.738
	SRR8316900	Third green stage	47.449
	SRR8316901	Third green stage	46.666
	SRR8316898	Complete white stage	15.912
	SRR8316899	Complete white stage	43.054
	SRR8316903	Complete white stage	24.945
	SRR8316902	Silver flowering stage	18.221
	SRR8316904	Silver flowering stage	27.315
	SRR8316905	Silver flowering stage	12.390
	SRR8316906	Gold flowering stage	50.316
	SRR8316907	Gold flowering stage	43.061
	SRR8316908	Gold flowering stage	44.349
SRP132670	SRR6706286	Control	16.449
	SRR6706287	Light intensity 50%	16.596
	SRR6706288	Light intensity 20%	15.148
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.765
	CNS0095593	Slightly white alabastrum(diploid) 2	22.755
	CNS0095594	Slightly white alabastrum(diploid) 3	28.376
	CNS0095595	Whole white alabastrum(diploid) 2	26.780
	CNS0095596	Whole white alabastrum(diploid) 3	31.474
	CNS0095597	Whole white alabastrum(diploid) 4	27.049
	CNS0095598	Silvery flower (diploied) 1	23.596
	CNS0095599	Silvery flower (diploied) 2	19.258
	CNS0095600	Silvery flower (diploied) 3	33.843
	CNS0095601	Golden flower (diploid) 1	23.458
	CNS0095602	Golden flower (diploid) 2	29.280
	CNS0095603	Golden flower (diploid) 3	31.617
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.337
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.214
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.108
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.610
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.622
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.567
	CNS0095610	Silvery flower (tetraploid) 1	36.898
	CNS0095611	Silvery flower (tetraploid) 2	33.109
	CNS0095612	Silvery flower (tetraploid) 3	26.183
	CNS0095613	Golden flower (tetraploid) 1	28.310
	CNS0095614	Golden flower (tetraploid) 2	34.114
	CNS0095615	Golden flower (tetraploid) 3	30.834
CRA001975	CRR073297	Stem 1	16.952
	CRR073298	Stem 2	15.510
	CRR073299	Stem 3	16.371
	CRR073300	Leaf 1	18.414
	CRR073301	Leaf 2	18.540
	CRR073302	Leaf 3	16.558
	CRR073303	Juvenile bud 1	15.555
	CRR073304	Juvenile bud 2	15.551
	CRR073305	Juvenile bud 3	14.608
	CRR073306	Third green 1	9.068
	CRR073307	Third green 2	10.256
	CRR073308	Third green 3	9.299
	CRR073309	Second white 1	9.354
	CRR073310	Second white 2	12.366
	CRR073311	Second white 3	14.661
	CRR073312	Silver flowering 1	12.675
	CRR073313	Silver flowering 2	11.725
	CRR073314	Silver flowering 3	11.110
	CRR073315	Gold flowering 1	9.968
	CRR073316	Gold flowering 2	11.527
	CRR073317	Gold flowering 3	8.947
	CRR073318	Tawny withering 1	11.263
	CRR073319	Tawny withering 2	11.253
	CRR073320	Tawny withering 3	10.524