Detail information of GWHGAAZE027008


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010104093.11.51623E-59hypothetical protein L484_014280 [Morus notabilis]
Swissprottr|Q9LUB6|SNE_ARATH4E-43F-box protein SNE
trEMBLtr|W9SC82|W9SC82_9ROSA6E-60Uncharacterized protein {ECO:0000313|EMBL:EXB98294.1}
TAIR10AT5G48170.13E-28F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1348588013486308-
GWHAAZE00000008mRNA1348588013486308-
GWHAAZE00000008exon1348607913486308-
GWHAAZE00000008exon1348588013486048-
GWHAAZE00000008CDS1348607913486308-
GWHAAZE00000008CDS1348588013486048-
Transcript Sequence

Network for GWHGAAZE027008

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like2423.30E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.457
SRR3591707mature leaf0.000
SRR3591708Shoot apex4.846
SRR3591709Stem0.425
SRR3591710White floral bud0.035
SRR3591711White flower0.000
SRR3591712Green floral bud0.179
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.583
SRR8316896Juvenile bud stage 0.679
SRR8316897Juvenile bud stage 0.453
SRR8316894Third green stage 0.409
SRR8316900Third green stage 1.525
SRR8316901Third green stage 0.712
SRR8316898Complete white stage 0.165
SRR8316899Complete white stage 4.212
SRR8316903Complete white stage 0.431
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.336
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.663
SRR6706287Light intensity 50%2.548
SRR6706288Light intensity 20%2.351
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.956
CNS0095593Slightly white alabastrum(diploid) 20.404
CNS0095594Slightly white alabastrum(diploid) 30.274
CNS0095595Whole white alabastrum(diploid) 20.612
CNS0095596Whole white alabastrum(diploid) 30.839
CNS0095597Whole white alabastrum(diploid) 40.519
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.056
CNS0095600Silvery flower (diploied) 30.108
CNS0095601Golden flower (diploid) 10.116
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 11.188
CNS0095605Slightly white alabastrum(tetraploid) 21.768
CNS0095606Slightly white alabastrum(tetraploid) 32.830
CNS0095607Whole white alabastrum(tetraploid) 11.924
CNS0095608Whole white alabastrum(tetraploid) 21.150
CNS0095609Whole white alabastrum(tetraploid) 30.249
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.205
CNS0095612Silvery flower (tetraploid) 30.463
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.900
CRR073298Stem 22.383
CRR073299Stem 31.361
CRR073300Leaf 11.885
CRR073301Leaf 22.028
CRR073302Leaf 34.439
CRR073303Juvenile bud 13.234
CRR073304Juvenile bud 20.430
CRR073305Juvenile bud 32.986
CRR073306Third green 10.111
CRR073307Third green 20.100
CRR073308Third green 30.296
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.091
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.098
CRR073319Tawny withering 20.000
CRR073320Tawny withering 31.632