Detail information of GWHGAAZE027016


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP19108.10unnamed protein product [Coffea canephora]
COGYP_006869331.12E-32two-component histidine kinase sensor with PAS and GAF domains
Swissprottr|Q10CQ8|PHYC_ORYSJ0Phytochrome C
trEMBLtr|A0A068VHF6|A0A068VHF6_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_349 {ECO:0000313|EMBL:CDP19108.1}
TAIR10AT5G35840.10phytochrome C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1356546113569889-
GWHAAZE00000008mRNA1356546113569889-
GWHAAZE00000008exon1356546113565776-
GWHAAZE00000008exon1356637413566670-
GWHAAZE00000008exon1356781613568632-
GWHAAZE00000008exon1356883613569889-
GWHAAZE00000008CDS1356883613569889-
GWHAAZE00000008CDS1356781613568632-
GWHAAZE00000008CDS1356637413566670-
GWHAAZE00000008CDS1356557813565776-
GWHAAZE00000008three_prime_UTR1356546113565577-
Transcript Sequence

Network for GWHGAAZE027016

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01590.27GAF1682.30E-11
PF00360.21PHY812544.10E-54
PF00989.26PAS2864001.40E-17
PF00989.26PAS4165381.30E-17
PF02518.27HATPase_c6727808.50E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12120PHYA Circadian rhythm - plant map04712

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0009584biological_processdetection of visible light
GO:0018298biological_processprotein-chromophore linkage
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0000155molecular_functionphosphorelay sensor kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.538
SRR3591706second leaf13.654
SRR3591707mature leaf23.458
SRR3591708Shoot apex21.961
SRR3591709Stem26.505
SRR3591710White floral bud18.184
SRR3591711White flower26.683
SRR3591712Green floral bud19.829
SRR3591713Yellow flower23.201
SRP173429 SRR8316895Juvenile bud stage 13.141
SRR8316896Juvenile bud stage 18.200
SRR8316897Juvenile bud stage 8.365
SRR8316894Third green stage 7.444
SRR8316900Third green stage 20.617
SRR8316901Third green stage 18.761
SRR8316898Complete white stage 4.998
SRR8316899Complete white stage 19.765
SRR8316903Complete white stage 11.746
SRR8316902Silver flowering stage8.414
SRR8316904Silver flowering stage14.820
SRR8316905Silver flowering stage6.364
SRR8316906Gold flowering stage 24.759
SRR8316907Gold flowering stage 22.405
SRR8316908Gold flowering stage 28.656
SRP132670SRR6706286Control18.368
SRR6706287Light intensity 50%17.673
SRR6706288Light intensity 20%18.135
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.337
CNS0095593Slightly white alabastrum(diploid) 210.788
CNS0095594Slightly white alabastrum(diploid) 310.678
CNS0095595Whole white alabastrum(diploid) 210.176
CNS0095596Whole white alabastrum(diploid) 39.933
CNS0095597Whole white alabastrum(diploid) 48.596
CNS0095598Silvery flower (diploied) 120.830
CNS0095599Silvery flower (diploied) 216.966
CNS0095600Silvery flower (diploied) 327.451
CNS0095601Golden flower (diploid) 120.328
CNS0095602Golden flower (diploid) 233.429
CNS0095603Golden flower (diploid) 332.237
CNS0095604Slightly white alabastrum(tetraploid) 113.176
CNS0095605Slightly white alabastrum(tetraploid) 213.320
CNS0095606Slightly white alabastrum(tetraploid) 326.311
CNS0095607Whole white alabastrum(tetraploid) 111.862
CNS0095608Whole white alabastrum(tetraploid) 210.709
CNS0095609Whole white alabastrum(tetraploid) 317.749
CNS0095610Silvery flower (tetraploid) 132.442
CNS0095611Silvery flower (tetraploid) 231.394
CNS0095612Silvery flower (tetraploid) 324.818
CNS0095613Golden flower (tetraploid) 121.924
CNS0095614Golden flower (tetraploid) 230.756
CNS0095615Golden flower (tetraploid) 337.155
CRA001975CRR073297Stem 124.074
CRR073298Stem 224.043
CRR073299Stem 320.203
CRR073300Leaf 124.180
CRR073301Leaf 221.875
CRR073302Leaf 315.961
CRR073303Juvenile bud 117.283
CRR073304Juvenile bud 213.881
CRR073305Juvenile bud 323.642
CRR073306Third green 18.524
CRR073307Third green 24.176
CRR073308Third green 38.983
CRR073309Second white 17.015
CRR073310Second white 210.096
CRR073311Second white 314.374
CRR073312Silver flowering 112.155
CRR073313Silver flowering 210.335
CRR073314Silver flowering 312.767
CRR073315Gold flowering 115.166
CRR073316Gold flowering 224.523
CRR073317Gold flowering 317.244
CRR073318Tawny withering 115.831
CRR073319Tawny withering 215.225
CRR073320Tawny withering 314.802