Gene detail

Detail information of GWHGAAZE027017

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACC60971.1	6.0514E-180	phytochrome C [Vitis riparia]
COG	YP_007123595.1	2E-36	bacteriophytochrome (light-regulated signal transduction histidine kinase)
Swissprot	tr\|A2XM23\|PHYC_ORYSI	7E-152	Phytochrome C
trEMBL	tr\|B9U4G8\|B9U4G8_VITRI	2E-180	Phytochrome {ECO:0000256\|PIRNR:PIRNR000084}
TAIR10	AT5G35840.1	2E-118	phytochrome C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13569979	13571012	-
GWHAAZE00000008	mRNA	13569979	13571012	-
GWHAAZE00000008	exon	13569979	13570870	-
GWHAAZE00000008	exon	13570996	13571012	-
GWHAAZE00000008	CDS	13570996	13571012	-
GWHAAZE00000008	CDS	13569979	13570870	-

Transcript Sequence
>GWHTAAZE027051 ATGTTCAATGGATTGAGATCGACGAACATAACGACTTCTTCAAGGAGCAGTTCTGCTAGATTGAGACATGGAGATCGTGTGGTTGCTCAAACTCCGATTGATGCTAAGCTTCATGTGGACTTTGAAGAATCTGAGCGCTTGTTTGATTATTCTACTTCTGTCGACTTTAATGCCTCAACCTCCACTAGCAATCTCCCCTCCTCTACTGTATCAGCTTATCTCCGAAAGATGCAAAGAGGAAGTCTAATTCAGCCTTTTGGTTGTTTGATTGCCATCAATGAACAAAACTTCACTGTTCTTGCTTACAGCGAAAATGCCCCAGAAATGTTGGATTTAGCCCCACACACAGTTCCCAATATTGAGCAAAAAGAGGCTCTTACTTTTGGAACTGATGTTCGGTCACTTTTTCGATCCTCTGGTGCCACTGCACTTCAAAAAGCGGTCAATTTCACCGATGTTAATCTCCTCAATCCTATTTTGGTTCATTGTAAAAATTCTGGTAAGCCCTTTTATGCAATTCTCCATCGGATCGATGTGGGATTAGTAGTAGATTTGGAGCCTGTTAATCCAGCAGATGTGCCAGTGACCGCTGCTGGTGCATTAAAATCGTACAAGCTCGCCGCTAAAGCCATCTCAAGACTGCAATCTTTATCAAATGGAAATATATCACTTTTATGCGATGTGCTGGTCCGAGAAGTGAGTGATTTGGTGGGTTATGATCGGGTGATGGTGTACAAATTTCATGAGGACGAACACGGTGAAGTTGTTGCTGAGTGTCGTAGCTCCGAGCTGGAACCTTATCTTGGCTTGCATTACCCGGCTACTGATATACCACAGGCTTCAAGATTTCTCTTCATGAAGAATAAGGTTAGGATGATCTGCGATTGTTTAGCCCCACCGTTAAAGTGA

Network for GWHGAAZE027017

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08446.12	PAS_2	72	188	1.90E-40
PF01590.27	GAF	222	295	1.50E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12120	PHYA	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009584	biological_process	detection of visible light
GO:0018298	biological_process	protein-chromophore linkage
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.355
	SRR3591706	second leaf	9.950
	SRR3591707	mature leaf	16.195
	SRR3591708	Shoot apex	13.805
	SRR3591709	Stem	19.648
	SRR3591710	White floral bud	13.632
	SRR3591711	White flower	19.585
	SRR3591712	Green floral bud	12.327
	SRR3591713	Yellow flower	14.128
SRP173429	SRR8316895	Juvenile bud stage	7.193
	SRR8316896	Juvenile bud stage	9.910
	SRR8316897	Juvenile bud stage	7.526
	SRR8316894	Third green stage	5.165
	SRR8316900	Third green stage	11.318
	SRR8316901	Third green stage	9.088
	SRR8316898	Complete white stage	4.375
	SRR8316899	Complete white stage	13.545
	SRR8316903	Complete white stage	7.085
	SRR8316902	Silver flowering stage	4.813
	SRR8316904	Silver flowering stage	12.588
	SRR8316905	Silver flowering stage	4.359
	SRR8316906	Gold flowering stage	15.476
	SRR8316907	Gold flowering stage	14.486
	SRR8316908	Gold flowering stage	15.998
SRP132670	SRR6706286	Control	10.066
	SRR6706287	Light intensity 50%	9.163
	SRR6706288	Light intensity 20%	9.640
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.977
	CNS0095593	Slightly white alabastrum(diploid) 2	2.524
	CNS0095594	Slightly white alabastrum(diploid) 3	2.818
	CNS0095595	Whole white alabastrum(diploid) 2	1.937
	CNS0095596	Whole white alabastrum(diploid) 3	1.600
	CNS0095597	Whole white alabastrum(diploid) 4	4.002
	CNS0095598	Silvery flower (diploied) 1	12.021
	CNS0095599	Silvery flower (diploied) 2	7.632
	CNS0095600	Silvery flower (diploied) 3	21.666
	CNS0095601	Golden flower (diploid) 1	7.328
	CNS0095602	Golden flower (diploid) 2	29.904
	CNS0095603	Golden flower (diploid) 3	26.853
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.459
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.239
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.409
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.712
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.154
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.529
	CNS0095610	Silvery flower (tetraploid) 1	24.785
	CNS0095611	Silvery flower (tetraploid) 2	25.841
	CNS0095612	Silvery flower (tetraploid) 3	17.560
	CNS0095613	Golden flower (tetraploid) 1	7.396
	CNS0095614	Golden flower (tetraploid) 2	18.177
	CNS0095615	Golden flower (tetraploid) 3	32.184
CRA001975	CRR073297	Stem 1	18.031
	CRR073298	Stem 2	16.584
	CRR073299	Stem 3	15.887
	CRR073300	Leaf 1	21.757
	CRR073301	Leaf 2	13.674
	CRR073302	Leaf 3	14.387
	CRR073303	Juvenile bud 1	10.418
	CRR073304	Juvenile bud 2	9.975
	CRR073305	Juvenile bud 3	17.478
	CRR073306	Third green 1	8.369
	CRR073307	Third green 2	3.778
	CRR073308	Third green 3	6.600
	CRR073309	Second white 1	5.166
	CRR073310	Second white 2	6.083
	CRR073311	Second white 3	10.505
	CRR073312	Silver flowering 1	9.114
	CRR073313	Silver flowering 2	12.020
	CRR073314	Silver flowering 3	8.684
	CRR073315	Gold flowering 1	6.137
	CRR073316	Gold flowering 2	21.405
	CRR073317	Gold flowering 3	12.819
	CRR073318	Tawny withering 1	8.044
	CRR073319	Tawny withering 2	4.109
	CRR073320	Tawny withering 3	7.519