Gene detail

Detail information of GWHGAAZE027018

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010262401.1	0	PREDICTED: alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Nelumbo nucifera]
trEMBL	tr\|M5X5I2\|M5X5I2_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16788.1}
TAIR10	AT2G05320.1	2E-161	beta-1,2-N-acetylglucosaminyltransferase II

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13575597	13576640	-
GWHAAZE00000008	mRNA	13575597	13576640	-
GWHAAZE00000008	exon	13575597	13576640	-
GWHAAZE00000008	CDS	13575597	13576640	-

Transcript Sequence
>GWHTAAZE027052 ATGGATTTATACCCAAATCTAGCCAAGGATCATATAGTTATTGTTCTGTATGTTCATAATAGACCCCAATATCTACAGTTAGTTCTTAATAGCCTCTCTAAAGTAGTGGGGATTAGCGAAACGCTGCTCATTGTTAGTCATGATGGTTACTTCGAGGAGATGAACAAGATTGTGGAAGATGTTAAATTTTGCCGAGTGAAACAAATATTTGCCCCTTACTCCCCTCATATCTTCCCCAATAGCTTTCCGGGTGTCTCCTTGACAGATTGCAAGGACAAAGATGACCCAACTAAGAATAATTGCAGAGGGAATCACGATCAATATGGAAACCATCGGTCTCCAAATATTGTGTCATTGAAGCATCATTGGTGGTGGATGATGAACACGGTATGGGATGGGCTAAAGGAGACGCATCAACATTCGGGTCATATTCTTTTCATTGAAGAGGACCATTTCATTTTTCCCAATGCGTATCGCAATTTGCAGTCGCTTAAAGATCTGAAACCCGGAAAGTGTCCTAATTGCTACGCAATGAATTTGGCACCATGTGATGTAAAGTCAAGGGGAGAAGGAACGGAGACTTTAGTTGCGGAGAGAATGGGTAATGTGGGTTATGCATTTAACCAGACCGTATGGAGGAAAATACACAAAAGGGCTAGAGAGTTTTGTTTCTTTGATGATTACAACTGGGATATAACTATGTGGTCGACTGTTTATCCTTCATTTGGCAGCCCGGTTTACACATTACGAGGACCTAGGACTAGTGCTGTTCACTTTGGGAAATGTGGTTTGCATCAAGGCCAGGGGGCGAAAGGTGCTTGTATTGACAATGGTTTGGCGAAGATTAAAGTAGAAGAGGTTGATAAGATTGCTAATATCAAAACAAACTGGGAAGTAAACGTATATGCGCAGCAAGCGGGATATCAAGCTGGGTTCAGGGGGTGGGGAGGCTGGGGAGATAAAAGAGACCACCAGTTGTGCTTGGATTTTGCTAACATGTATAACTTGGGTGGCACATCATATCGCTTTTTGAAGAGTTTTTAG

Network for GWHGAAZE027018

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05060.15	MGAT2	2	327	4.00E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00736	MGAT2	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0009312	biological_process	oligosaccharide biosynthetic process
GO:0005795	cellular_component	Golgi stack
GO:0016021	cellular_component	integral component of membrane
GO:0008455	molecular_function	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.728
	SRR3591706	second leaf	3.330
	SRR3591707	mature leaf	0.954
	SRR3591708	Shoot apex	4.025
	SRR3591709	Stem	11.828
	SRR3591710	White floral bud	2.682
	SRR3591711	White flower	2.765
	SRR3591712	Green floral bud	4.392
	SRR3591713	Yellow flower	0.771
SRP173429	SRR8316895	Juvenile bud stage	5.926
	SRR8316896	Juvenile bud stage	7.759
	SRR8316897	Juvenile bud stage	2.090
	SRR8316894	Third green stage	2.173
	SRR8316900	Third green stage	5.393
	SRR8316901	Third green stage	5.443
	SRR8316898	Complete white stage	0.493
	SRR8316899	Complete white stage	2.677
	SRR8316903	Complete white stage	1.139
	SRR8316902	Silver flowering stage	0.636
	SRR8316904	Silver flowering stage	1.050
	SRR8316905	Silver flowering stage	0.236
	SRR8316906	Gold flowering stage	2.453
	SRR8316907	Gold flowering stage	2.091
	SRR8316908	Gold flowering stage	1.172
SRP132670	SRR6706286	Control	2.523
	SRR6706287	Light intensity 50%	3.166
	SRR6706288	Light intensity 20%	3.301
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.671
	CNS0095593	Slightly white alabastrum(diploid) 2	7.008
	CNS0095594	Slightly white alabastrum(diploid) 3	14.298
	CNS0095595	Whole white alabastrum(diploid) 2	4.477
	CNS0095596	Whole white alabastrum(diploid) 3	6.827
	CNS0095597	Whole white alabastrum(diploid) 4	3.431
	CNS0095598	Silvery flower (diploied) 1	3.724
	CNS0095599	Silvery flower (diploied) 2	4.087
	CNS0095600	Silvery flower (diploied) 3	2.007
	CNS0095601	Golden flower (diploid) 1	4.785
	CNS0095602	Golden flower (diploid) 2	2.527
	CNS0095603	Golden flower (diploid) 3	2.756
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.888
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.594
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.262
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.195
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.459
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.739
	CNS0095610	Silvery flower (tetraploid) 1	1.474
	CNS0095611	Silvery flower (tetraploid) 2	1.037
	CNS0095612	Silvery flower (tetraploid) 3	1.270
	CNS0095613	Golden flower (tetraploid) 1	0.593
	CNS0095614	Golden flower (tetraploid) 2	1.495
	CNS0095615	Golden flower (tetraploid) 3	0.221
CRA001975	CRR073297	Stem 1	4.299
	CRR073298	Stem 2	3.504
	CRR073299	Stem 3	2.627
	CRR073300	Leaf 1	1.437
	CRR073301	Leaf 2	1.648
	CRR073302	Leaf 3	2.075
	CRR073303	Juvenile bud 1	1.871
	CRR073304	Juvenile bud 2	0.976
	CRR073305	Juvenile bud 3	2.555
	CRR073306	Third green 1	0.762
	CRR073307	Third green 2	0.228
	CRR073308	Third green 3	0.822
	CRR073309	Second white 1	0.137
	CRR073310	Second white 2	0.325
	CRR073311	Second white 3	0.148
	CRR073312	Silver flowering 1	0.352
	CRR073313	Silver flowering 2	0.404
	CRR073314	Silver flowering 3	0.844
	CRR073315	Gold flowering 1	2.134
	CRR073316	Gold flowering 2	1.970
	CRR073317	Gold flowering 3	1.607
	CRR073318	Tawny withering 1	4.482
	CRR073319	Tawny withering 2	6.433
	CRR073320	Tawny withering 3	5.795