Gene detail

Detail information of GWHGAAZE027025

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003633333.1	0	PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]
COG	YP_007058022.1	3E-13	hypothetical protein Riv7116_5077
Swissprot	tr\|Q39214\|RPM1_ARATH	0	Disease resistance protein RPM1
trEMBL	tr\|B9GTE7\|B9GTE7_POPTR	0	Disease resistance protein RPM1 {ECO:0000313\|EMBL:EEE80846.2}
TAIR10	AT3G07040.1	3E-170	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13647292	13650245	+
GWHAAZE00000008	mRNA	13647292	13650245	+
GWHAAZE00000008	exon	13647292	13649994	+
GWHAAZE00000008	exon	13650183	13650245	+
GWHAAZE00000008	CDS	13647292	13649994	+
GWHAAZE00000008	CDS	13650183	13650245	+

Transcript Sequence
>GWHTAAZE027059 ATGGCAGATGGTGCTGTAAATTTCCTACTTGATAGACTTGCAGCAATCCTAACGCAGAATGCATCACTGTTAGGAGATGCTCGAAATGAAATCGAGGAAATCAAGCTTGAGCTTGAAAGCATGAGATCCTTTTTGGGAGATGCAGAGAAAAGGAAGGACGTGAGTGAATTAGTAGAAACTTGGGTTAGGCAAGTAAGAGAAGTATCAAATCAAGTCGAGGATGTTATAGATGAGTTCATGCACTACAAGGACATACAACAAGAAAAAAAGCGACTCAATCATTTCGTCAAAGACATCGTCAGCCTCCCAAAGCACATAACTACAATGCATAGAATCTCTAAAAAGCTACAAAAGATCAAAGCCAAGGTTCATGAGGTCTTTGAGAGAAGCAAGAGATACGCGTTTGCTAATCAAACAAACGAGGGGAGAGGTAGTAGAAATGCATCTATTGACTGGCGGCAGCATCACGGAGAATCGTGTTTCTTTGTTGAAGAAGATGAGATAGTGGGGATGGACAAAAGTAAAGAACAACTGCTCAAATGGTTAGCCTCAGCCGACAGGCGGAGGACCATTATCTCAATTGTGGGAATGGGAGGATTAGGTAAGACTACTTTAGTCACAAAGATTTTCAATGATCAGGTAATTAAGCGACAGTTTGATTGTTGGGCATGGATCTCTGTGCCCCAAACAAATGGGGTTGAGGAGTTACTACGAAGCATGGTCAAAGAATTTCTCAAGACAAAACAAAAGATGATTCCTAGCAACTTGGCTTCAATGAAATATAGACAGCTCGTGGAGATGCTGATTGAATATTTGCACCAGAAAAGGTATGTGGTTGTCTTAGATGATGTATGGAACATAGTTCTATGGAGTAAAATAAGAGGTGCATTTCCTGATAATAGTTGTGGTAGCAGAGTAATTTTCACAACAAGGAACGAGAATGTAGCTACTTCTGTGGGACCCGGAAGTCGGGTCCATCGCCTTGAACCTCTCCAAGAGAGTGATGCATGGGCCCTCTTTTGTAACAAGGCCTTCTGGAGTCACCCGGATCGCAATTGCCCTGTAGAGATCGAAGCTTTAGCTAAGGCCATTATGAGGAAGTGTGAAGGGTTACCGCTTGCAATAGTGGCCATCGGAGGACTCATGTGTTCAAGAAACAAGATGGCTGTAGAGTGGAAGTCGGTTTACAGTAGCCTCAATTGGCAATTGAGCAACAATCCCATGCTTGAACCATTGAAGAGCATCCTGCTGTGGAGTTTCAATGATCTACCGTTCTATCTAAAGCATTGCTTTTTGTATTGCTGTGTTTTTCGTGATGGTTGTCCAATCAAGAGGAAAAAATTAATTCGGCTTTGGGCTGCAGAGGGGTTTATTATGGAAAGAAAAGGAATGACAATGGAAGAAGTTGCAGAGGATTATCTTATGGAACTTATTTTGCGAAGCATGATCCAGGTGACAGAGACTAACGATGCTGGAAGGGAGAAGAAGTTTAGAGTGCATGATGTTATGCGAGAACTGGCTGTAACAACAGCAGAAAAAGAAAATTTCTGCACAGCATATGATGGCAGAGAAGCAAGACTTGAAGGAAAAACCCAACGGCTATCAATCTATAACAGAGGTGAAAGCATCCAAATAAGCAGGTCTATGTCACACCATCTTCGCTCTTTCTTTGTCTTTGAAACAGATACTGGGTTATCCTTCTCTTTGAATGAAGTGTCCTCATATTTCAAGTTTCTAAGGGTCCTTGATGTACAGGGAGTTTCTATCGAAAAAATACCTAGTACAGTGGTTGATTTATTCAATTTGAGGTACTTGAACTTAAGCGAAACCAAGGTTAGGAAGCTACCCAAGTCAATAGAAAGGCTAAGACAGCTGCAAACATTGGATGTTAGGAACACCAATGTGAAGGAGCTGCCAAACGGAATATCAAAGCTACCGAAACTTCGGCATCTATTTTTGTGCCGTAACAACAATAATCAGGATACTGAAACTTTGGACTTTCTCTGTGGCATGCGAGTACCAGCAGGAATAGGAAACATAAGAAACTTACAAACTCTGTCATGCATTGAAGCAGAGGAAGATTTTATCAAAGAAGTAGGGAATTTGACTGAGCTCAAGAGGTTGGATATTTCAAGGCTAAGATCAGTTGATGGACTGAAGTTGTGCATGTCAATCCAAAAGATGACAAGCCTCCGCTGTTTAAGTGTTATGGCTTGCAATGAACAAGAAGAGCTTCAGTTGGAAGACTTGCATTTGCCCCCATTTTTTCTACAGAAGATGACTTTGGTTGGACAATTGAAAAAGTTGCCTCACTGGGTAGGATCCTTGGTGAATCTAACTCACTTGCACTTGTCTTCATCTTGTTTAGAACAAGACTTACTTCCTTCCATCCACACACTGCCAACTCTTGTGTTCCTTGAGCTTAAGAAAGCATATAATGGTAGGCTCTTGCACTTCAAGGCAGACGGGTTTCTTAAACTCAGCAAGCTGAATTTGCGGGAGCTTGTACATCTAGATAGTATTAGAATAGAGGAGGGTGCTTTGCCAAACATCAAGGGTTTGTATCTAATTCGTTGTGAAGAATTGAGTCTGTTGCCCCAAGGCATTGAGTACCTTACTAGCCTTCAAACGTTGCACTTGGAGGAAATGCCGGTCGAATTGGTACAGAGGTTGCGTAGTGATACAAGCGAGGACCGTGCAAAGAGCTGTGGAAAGGGCACACTAAGTGCTGGGCGGAGACGGTTTCAGACCTTTGTTGTCTGGTGA

Network for GWHGAAZE027025

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18052.2	Rx_N	5	92	2.00E-21
PF00931.23	NB-ARC	172	421	8.90E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13457	RPM1, RPS3	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.188
	SRR3591706	second leaf	0.322
	SRR3591707	mature leaf	0.879
	SRR3591708	Shoot apex	0.703
	SRR3591709	Stem	0.142
	SRR3591710	White floral bud	0.399
	SRR3591711	White flower	0.279
	SRR3591712	Green floral bud	0.104
	SRR3591713	Yellow flower	0.097
SRP173429	SRR8316895	Juvenile bud stage	0.619
	SRR8316896	Juvenile bud stage	1.582
	SRR8316897	Juvenile bud stage	0.155
	SRR8316894	Third green stage	0.318
	SRR8316900	Third green stage	0.289
	SRR8316901	Third green stage	0.291
	SRR8316898	Complete white stage	0.016
	SRR8316899	Complete white stage	0.231
	SRR8316903	Complete white stage	0.036
	SRR8316902	Silver flowering stage	0.014
	SRR8316904	Silver flowering stage	0.107
	SRR8316905	Silver flowering stage	0.065
	SRR8316906	Gold flowering stage	0.038
	SRR8316907	Gold flowering stage	0.110
	SRR8316908	Gold flowering stage	0.064
SRP132670	SRR6706286	Control	0.181
	SRR6706287	Light intensity 50%	0.337
	SRR6706288	Light intensity 20%	0.171
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.172
	CNS0095593	Slightly white alabastrum(diploid) 2	0.208
	CNS0095594	Slightly white alabastrum(diploid) 3	0.285
	CNS0095595	Whole white alabastrum(diploid) 2	0.135
	CNS0095596	Whole white alabastrum(diploid) 3	0.125
	CNS0095597	Whole white alabastrum(diploid) 4	0.209
	CNS0095598	Silvery flower (diploied) 1	0.902
	CNS0095599	Silvery flower (diploied) 2	0.440
	CNS0095600	Silvery flower (diploied) 3	0.292
	CNS0095601	Golden flower (diploid) 1	0.413
	CNS0095602	Golden flower (diploid) 2	0.449
	CNS0095603	Golden flower (diploid) 3	0.478
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.181
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.149
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.259
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.077
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.153
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.093
	CNS0095612	Silvery flower (tetraploid) 3	0.072
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.056
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.876
	CRR073298	Stem 2	1.476
	CRR073299	Stem 3	0.400
	CRR073300	Leaf 1	0.153
	CRR073301	Leaf 2	0.587
	CRR073302	Leaf 3	0.367
	CRR073303	Juvenile bud 1	0.015
	CRR073304	Juvenile bud 2	0.001
	CRR073305	Juvenile bud 3	0.066
	CRR073306	Third green 1	0.259
	CRR073307	Third green 2	0.054
	CRR073308	Third green 3	0.247
	CRR073309	Second white 1	0.143
	CRR073310	Second white 2	0.016
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.051
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.480
	CRR073316	Gold flowering 2	1.071
	CRR073317	Gold flowering 3	0.235
	CRR073318	Tawny withering 1	0.320
	CRR073319	Tawny withering 2	0.576
	CRR073320	Tawny withering 3	0.105