Gene detail

Detail information of GWHGAAZE027041

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007049452.1	ADP glucose pyrophosphorylase 1 [Theobroma cacao]
COG	YP_007066226.1	glucose-1-phosphate adenylyltransferase
Swissprot	tr\|P23509\|GLGS_SOLTU	Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|A0A061DLD3\|A0A061DLD3_THECC	Glucose-1-phosphate adenylyltransferase {ECO:0000256\|RuleBase:RU003565}
TAIR10	AT5G48300.1	ADP glucose pyrophosphorylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13922390	13926303	+
GWHAAZE00000008	mRNA	13922390	13926303	+
GWHAAZE00000008	exon	13922390	13922650	+
GWHAAZE00000008	exon	13923567	13923863	+
GWHAAZE00000008	exon	13923950	13924096	+
GWHAAZE00000008	exon	13924341	13924520	+
GWHAAZE00000008	exon	13924623	13924726	+
GWHAAZE00000008	exon	13924847	13924958	+
GWHAAZE00000008	exon	13925323	13925421	+
GWHAAZE00000008	exon	13925571	13925690	+
GWHAAZE00000008	exon	13925964	13926303	+
GWHAAZE00000008	CDS	13922390	13922650	+
GWHAAZE00000008	CDS	13923567	13923863	+
GWHAAZE00000008	CDS	13923950	13924096	+
GWHAAZE00000008	CDS	13924341	13924520	+
GWHAAZE00000008	CDS	13924623	13924726	+
GWHAAZE00000008	CDS	13924847	13924958	+
GWHAAZE00000008	CDS	13925323	13925421	+
GWHAAZE00000008	CDS	13925571	13925690	+
GWHAAZE00000008	CDS	13925964	13926080	+
GWHAAZE00000008	three_prime_UTR	13926081	13926303	+

Transcript Sequence
>GWHTAAZE027075 ATGGCGGCAATCGGAGCATTCAAGGCCCCTCATCACACCTCTTCTACCATCCCTAACGACCTAAGAGACTCCCGTACTACGCCGCTTCGGAGTCTATCCTTTGCTTCGTCTCATATAACCGGCGAAAAGATTAGACCGGCGTCCACTCAACGACGCCGTTCCGGTCAGTACTCCGTCGTTAGAGCTCCGATTATTGTTTCTCCCAAGGCTGTTTCTGATTCGAAGAATTCACAGACATGTCTCGATCCCGACGCAAGCAGAAGTGTACTGGGGATTATCCTTGGAGGTGGAGCTGGGACCCGTCTGTACCCCCTGACGAAGAAGAGGGCGAAACCAGCTGTTCCTTTGGGAGCAAACTATAGGCTTATTGATATCCCTGTCAGCAATTGCTTGAACAGCAACATATCCAAGATTTATGTTCTTACGCAATTTAATTCTGCATCTCTTAATCGGCACCTTTCACGGGCTTATGCCAGTAATATGGGTGGTTACAAGAATGAAGGATTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCAGAGAATCCTAACTGGTTCCAGGGTACAGCTGATGCTGTGAGGCAGTATTTGTGGCTGTTTGAAGAGCATAATGTTCTAGAGTATCTGATTCTTGCTGGGGATCATTTATACCGTATGGATTATGAGAAATTTATCCAAGCACACAGAGAAACAGACGCTGATATCACTGTTGACACTACCATTTTAGGTCTTGACGATGAGAGAGCCAAAGAGATGCCTTATATTGCTAGTATGGGTATCTATGTTGTTAGCAAAGATGTAATGCTGAACCTTCTTCGAGATAAGTTTCCCGGAGCCAATGATTTTGGAAGTGAAGTTATTCCTGGTGCAACTTCCATTGGATTGAGAGTGCAAGCATACTTGTATGACGGCTACTGGGAAGATATCGGTACAATTGAGGCTTTCTATAATGCCAATTTGGGGATCACAAAAAAGCCTGTGCCAGATTTCAGCTTCTATGATCGTTCATCCCCAATCTACACCCAACCTCGATATTTGCCTCCTTCTAAAATGCTCGATGCTGATGTTACAGATAGTGTTATCGGTGAGGGTTGTGTGATTAAGAACTGCAAAATTCACCATTCGGTGGTCGGGCTTCGATCTTGCATATCAGATGGTGCTATTATAGAAGATACTTTGTTGATGGGAGCAGATTATTATGAGACCGATGCTGACAAGAGGTTTCTGGCGGCAAAGGGTAGCGTTCCAATTGGTATTGGCAAGAATTCTCATATCAAGAGAGCAATAATTGACAAGAATGCTCGCATAGGAGACAATGTGAAGATCATTAATAGTGACAACGTTCAAGAAGCAGCAAGAGAAACTGATGGATACTTCATAAAAAGCGGAATTGTGACAATAATTAAGGATGCCTTGATTCCCAGTGGCACCATTATCTAGAAGTTAACCCTTTCCCATGCCTTCTTAGAGGACTCCCTTCGCTTCTTTTTGGTTGACAAGTGATGTAATCTATCTTCGCTATACACTTTTATGTATAACACGTACTTGATAGTGGAAGAGCGGATATTTCATTTAATCCTGTAAAGGTCTTTCTTTAATCAAATAAAAGTTCGGCCCATAAATGTATCATCTGTCGTTTTCTTGAATTTTAGCAGAATATTTT

Network for GWHGAAZE027041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.24	NTP_transferase	91	239	5.30E-40
PF00483.24	NTP_transferase	250	323	7.10E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00975	glgC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0005978	biological_process	glycogen biosynthetic process
GO:0016779	molecular_function	nucleotidyltransferase activity
GO:0008878	molecular_function	glucose-1-phosphate adenylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	117.965
	SRR3591706	second leaf	84.594
	SRR3591707	mature leaf	49.399
	SRR3591708	Shoot apex	82.325
	SRR3591709	Stem	92.724
	SRR3591710	White floral bud	50.072
	SRR3591711	White flower	32.225
	SRR3591712	Green floral bud	106.592
	SRR3591713	Yellow flower	35.463
SRP173429	SRR8316895	Juvenile bud stage	69.584
	SRR8316896	Juvenile bud stage	93.772
	SRR8316897	Juvenile bud stage	48.116
	SRR8316894	Third green stage	49.720
	SRR8316900	Third green stage	179.103
	SRR8316901	Third green stage	160.304
	SRR8316898	Complete white stage	46.638
	SRR8316899	Complete white stage	121.406
	SRR8316903	Complete white stage	63.308
	SRR8316902	Silver flowering stage	39.849
	SRR8316904	Silver flowering stage	53.408
	SRR8316905	Silver flowering stage	30.101
	SRR8316906	Gold flowering stage	73.519
	SRR8316907	Gold flowering stage	83.536
	SRR8316908	Gold flowering stage	82.611
SRP132670	SRR6706286	Control	90.260
	SRR6706287	Light intensity 50%	110.371
	SRR6706288	Light intensity 20%	125.352
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	93.155
	CNS0095593	Slightly white alabastrum(diploid) 2	100.914
	CNS0095594	Slightly white alabastrum(diploid) 3	86.455
	CNS0095595	Whole white alabastrum(diploid) 2	117.596
	CNS0095596	Whole white alabastrum(diploid) 3	142.794
	CNS0095597	Whole white alabastrum(diploid) 4	115.507
	CNS0095598	Silvery flower (diploied) 1	59.374
	CNS0095599	Silvery flower (diploied) 2	56.232
	CNS0095600	Silvery flower (diploied) 3	88.190
	CNS0095601	Golden flower (diploid) 1	54.800
	CNS0095602	Golden flower (diploid) 2	75.729
	CNS0095603	Golden flower (diploid) 3	75.084
	CNS0095604	Slightly white alabastrum(tetraploid) 1	113.629
	CNS0095605	Slightly white alabastrum(tetraploid) 2	100.334
	CNS0095606	Slightly white alabastrum(tetraploid) 3	117.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	83.139
	CNS0095608	Whole white alabastrum(tetraploid) 2	94.916
	CNS0095609	Whole white alabastrum(tetraploid) 3	145.962
	CNS0095610	Silvery flower (tetraploid) 1	69.645
	CNS0095611	Silvery flower (tetraploid) 2	78.712
	CNS0095612	Silvery flower (tetraploid) 3	52.543
	CNS0095613	Golden flower (tetraploid) 1	38.754
	CNS0095614	Golden flower (tetraploid) 2	62.472
	CNS0095615	Golden flower (tetraploid) 3	23.935
CRA001975	CRR073297	Stem 1	82.758
	CRR073298	Stem 2	81.175
	CRR073299	Stem 3	68.096
	CRR073300	Leaf 1	110.971
	CRR073301	Leaf 2	89.174
	CRR073302	Leaf 3	110.628
	CRR073303	Juvenile bud 1	112.959
	CRR073304	Juvenile bud 2	116.884
	CRR073305	Juvenile bud 3	99.477
	CRR073306	Third green 1	31.473
	CRR073307	Third green 2	23.286
	CRR073308	Third green 3	21.732
	CRR073309	Second white 1	46.761
	CRR073310	Second white 2	37.822
	CRR073311	Second white 3	33.432
	CRR073312	Silver flowering 1	27.513
	CRR073313	Silver flowering 2	28.950
	CRR073314	Silver flowering 3	30.511
	CRR073315	Gold flowering 1	64.134
	CRR073316	Gold flowering 2	79.217
	CRR073317	Gold flowering 3	44.969
	CRR073318	Tawny withering 1	44.327
	CRR073319	Tawny withering 2	35.198
	CRR073320	Tawny withering 3	43.722