Detail information of GWHGAAZE027045


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002320544.20hypothetical protein POPTR_0014s17080g [Populus trichocarpa]
COGYP_003951479.12E-40regulator of chromosome condensation-like protein
Swissprottr|Q9FN03|UVR8_ARATH3E-34Ultraviolet-B receptor UVR8
trEMBLtr|B9IAX9|B9IAX9_POPTR0Uncharacterized protein {ECO:0000313|EMBL:EEE98859.2}
TAIR10AT5G48330.24E-144Regulator of chromosome condensation (RCC1) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1400903214013184-
GWHAAZE00000008mRNA1400903214013184-
GWHAAZE00000008exon1401274514013184-
GWHAAZE00000008exon1401124314011459-
GWHAAZE00000008exon1401012314010441-
GWHAAZE00000008exon1400903214009513-
GWHAAZE00000008five_prime_UTR1401308314013184-
GWHAAZE00000008CDS1401274514013082-
GWHAAZE00000008CDS1401124314011459-
GWHAAZE00000008CDS1401012314010441-
GWHAAZE00000008CDS1400903214009513-
Transcript Sequence

Network for GWHGAAZE027045

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0057


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13540.7RCC1_2751041.30E-08
PF00415.19RCC11461967.20E-11
PF00415.19RCC11992901.60E-06
PF00415.19RCC12933380.00017
PF00415.19RCC13533976.70E-07
PF00415.19RCC14004481.50E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.140
SRR3591706second leaf7.263
SRR3591707mature leaf10.373
SRR3591708Shoot apex10.994
SRR3591709Stem9.009
SRR3591710White floral bud6.342
SRR3591711White flower8.319
SRR3591712Green floral bud9.975
SRR3591713Yellow flower7.369
SRP173429 SRR8316895Juvenile bud stage 6.904
SRR8316896Juvenile bud stage 12.095
SRR8316897Juvenile bud stage 4.859
SRR8316894Third green stage 3.952
SRR8316900Third green stage 9.176
SRR8316901Third green stage 11.523
SRR8316898Complete white stage 2.896
SRR8316899Complete white stage 11.089
SRR8316903Complete white stage 4.189
SRR8316902Silver flowering stage3.377
SRR8316904Silver flowering stage3.224
SRR8316905Silver flowering stage1.622
SRR8316906Gold flowering stage 5.626
SRR8316907Gold flowering stage 7.347
SRR8316908Gold flowering stage 6.774
SRP132670SRR6706286Control15.555
SRR6706287Light intensity 50%15.411
SRR6706288Light intensity 20%15.307
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.021
CNS0095593Slightly white alabastrum(diploid) 210.154
CNS0095594Slightly white alabastrum(diploid) 310.546
CNS0095595Whole white alabastrum(diploid) 26.427
CNS0095596Whole white alabastrum(diploid) 36.533
CNS0095597Whole white alabastrum(diploid) 45.267
CNS0095598Silvery flower (diploied) 18.202
CNS0095599Silvery flower (diploied) 27.908
CNS0095600Silvery flower (diploied) 39.030
CNS0095601Golden flower (diploid) 19.528
CNS0095602Golden flower (diploid) 27.806
CNS0095603Golden flower (diploid) 37.365
CNS0095604Slightly white alabastrum(tetraploid) 18.408
CNS0095605Slightly white alabastrum(tetraploid) 27.314
CNS0095606Slightly white alabastrum(tetraploid) 310.670
CNS0095607Whole white alabastrum(tetraploid) 15.143
CNS0095608Whole white alabastrum(tetraploid) 25.473
CNS0095609Whole white alabastrum(tetraploid) 37.492
CNS0095610Silvery flower (tetraploid) 17.842
CNS0095611Silvery flower (tetraploid) 27.943
CNS0095612Silvery flower (tetraploid) 34.038
CNS0095613Golden flower (tetraploid) 13.872
CNS0095614Golden flower (tetraploid) 26.842
CNS0095615Golden flower (tetraploid) 34.695
CRA001975CRR073297Stem 110.048
CRR073298Stem 210.026
CRR073299Stem 39.557
CRR073300Leaf 110.062
CRR073301Leaf 212.603
CRR073302Leaf 312.006
CRR073303Juvenile bud 18.925
CRR073304Juvenile bud 28.152
CRR073305Juvenile bud 312.014
CRR073306Third green 11.319
CRR073307Third green 21.401
CRR073308Third green 31.997
CRR073309Second white 11.986
CRR073310Second white 21.635
CRR073311Second white 30.509
CRR073312Silver flowering 11.413
CRR073313Silver flowering 21.228
CRR073314Silver flowering 31.686
CRR073315Gold flowering 19.550
CRR073316Gold flowering 215.829
CRR073317Gold flowering 38.429
CRR073318Tawny withering 18.479
CRR073319Tawny withering 27.791
CRR073320Tawny withering 39.517