Gene detail

Detail information of GWHGAAZE027047

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009780884.1	0	PREDICTED: serine/threonine-protein kinase WAG1-like [Nicotiana sylvestris]
COG	YP_827085.1	1E-25	serine/threonine protein kinase
Swissprot	tr\|Q9C8M5\|WAG1_ARATH	0	Serine/threonine-protein kinase WAG1
trEMBL	tr\|M1D2J0\|M1D2J0_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400079838}
TAIR10	AT1G53700.1	1E-143	WAG 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14047548	14048948	+
GWHAAZE00000008	mRNA	14047548	14048948	+
GWHAAZE00000008	exon	14047548	14048315	+
GWHAAZE00000008	exon	14048373	14048948	+
GWHAAZE00000008	CDS	14047548	14048315	+
GWHAAZE00000008	CDS	14048373	14048948	+

Transcript Sequence
>GWHTAAZE027081 ATGGACGAAGATACCATATACCCACCGGAGTACTCTGACCTTGACTTAAGCTTCACCAGCACCACCTCCGCAGCCACCGATCACACCTTCAGCGCCCGTAGCAGCCTTGCTCGCAGCAGCCTCACTCTCAGCTTCAACGACCCCTCCCGCCTCTCCACCACCACCACCGTTCCAAATGTCCACAACCGCCCCCACCGCCAATCCGACCCTCATTGGTCATCCATTAACGCCGCCACCACCCTCTCCTCTGACGGCACCCTCCACCTCCGCCACCTCAAGCTCCTCCGCCACCTCGGCTCTGGCAACCTCGGCCGGGTCTTCCTCTGCCGCCTCCGCGACAACGACCACACCAACTTCGCCCTCAAAGTCGTCGACACAAACGCCCTCACGCAAAAAAAGCTATCACACGTTCAAACAGAAGCCCGGATCCTTTCCACCCTAGACCACCCTTTCCTCCCTACGCTCTACGCCCATCTCGAGGCATCACATTACACGTGTCTCCTCATCGATTACTGCCCCAACGGAGATCTCCATTCCTTGCTCCGCAAACAACCCCGTTACCGCCTGCCTCTGGAGTCGGTCAGGTTCTTCGCCTCCGAAGTACTCGTCGCACTCGAATACCTACACGCGCTTGGAATTGTATACAGAGATCTAAAACCCGAAAACATACTGATCCGTGAGGACGGTCACATTATGTTATCGGATTTCGACCTGTGCTTCAATGCCGATGTGACACCTAAATTGGAGCACCGGACCCACATAAATAAAGATGAGGTGGTGACGGAGTTTGTGGCTGAGCCAACTGCGGCGTTCTCGAGATCCTGTGTTGGGACCCACGAGTACTTGGCGCCGGAGTTAGTTAACGGCAACGGGCACGGAAACGGGGTAGACTGGTGGGCATTTGGGGTTTTGGTGTACGAGTTGCTTTACGGGACGACACCGTTTAAGGGAGGGAGCAAAGAGTCCACCCTGCGCAATATATCATCGAGCAGAGGGGTGAGTTTTAACATGGAAATTGAAGACGAGGGGATGAGTGAAGCAAGGGACTTGATAGGGAGGTTGTTGGTGAAGGACCCAAGGAGGAGGCTAGGGTGCGCAAGGGGTGCAACGGATATTAAAGGCCACCCTTTTTTTAATGGAATTAAATGGCCGTTGATCAGAACTTACAAGCCGCCAGAGGTACGTGGAATCGCCGTGAAAAAGAGTAAGGCGCACGTGTCAACCTCCCCAAAGAGACCGCGTTGTTATTTTTTGATGAAACATTATAAGGCATCAAAATATAACTTAAATTCTAATCGAAATTATTATTGTTATGCCAATCATAAGACTAGCAAATATGCATGA

Network for GWHGAAZE027047

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	94	378	7.40E-59

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.469
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.072
	SRR3591708	Shoot apex	1.941
	SRR3591709	Stem	0.198
	SRR3591710	White floral bud	1.299
	SRR3591711	White flower	1.575
	SRR3591712	Green floral bud	0.881
	SRR3591713	Yellow flower	1.037
SRP173429	SRR8316895	Juvenile bud stage	0.930
	SRR8316896	Juvenile bud stage	1.808
	SRR8316897	Juvenile bud stage	0.507
	SRR8316894	Third green stage	0.236
	SRR8316900	Third green stage	0.386
	SRR8316901	Third green stage	0.497
	SRR8316898	Complete white stage	0.071
	SRR8316899	Complete white stage	1.066
	SRR8316903	Complete white stage	0.416
	SRR8316902	Silver flowering stage	0.480
	SRR8316904	Silver flowering stage	0.413
	SRR8316905	Silver flowering stage	0.119
	SRR8316906	Gold flowering stage	0.440
	SRR8316907	Gold flowering stage	0.019
	SRR8316908	Gold flowering stage	0.130
SRP132670	SRR6706286	Control	0.858
	SRR6706287	Light intensity 50%	0.552
	SRR6706288	Light intensity 20%	0.392
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.666
	CNS0095593	Slightly white alabastrum(diploid) 2	1.096
	CNS0095594	Slightly white alabastrum(diploid) 3	1.572
	CNS0095595	Whole white alabastrum(diploid) 2	0.871
	CNS0095596	Whole white alabastrum(diploid) 3	0.391
	CNS0095597	Whole white alabastrum(diploid) 4	0.599
	CNS0095598	Silvery flower (diploied) 1	0.975
	CNS0095599	Silvery flower (diploied) 2	1.893
	CNS0095600	Silvery flower (diploied) 3	0.639
	CNS0095601	Golden flower (diploid) 1	0.607
	CNS0095602	Golden flower (diploid) 2	1.301
	CNS0095603	Golden flower (diploid) 3	0.981
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.087
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.898
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.790
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.768
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.283
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.818
	CNS0095610	Silvery flower (tetraploid) 1	0.914
	CNS0095611	Silvery flower (tetraploid) 2	0.902
	CNS0095612	Silvery flower (tetraploid) 3	1.074
	CNS0095613	Golden flower (tetraploid) 1	1.450
	CNS0095614	Golden flower (tetraploid) 2	0.669
	CNS0095615	Golden flower (tetraploid) 3	0.985
CRA001975	CRR073297	Stem 1	0.635
	CRR073298	Stem 2	0.924
	CRR073299	Stem 3	0.623
	CRR073300	Leaf 1	1.343
	CRR073301	Leaf 2	1.199
	CRR073302	Leaf 3	1.137
	CRR073303	Juvenile bud 1	0.394
	CRR073304	Juvenile bud 2	0.612
	CRR073305	Juvenile bud 3	1.052
	CRR073306	Third green 1	0.615
	CRR073307	Third green 2	0.058
	CRR073308	Third green 3	0.987
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.012
	CRR073311	Second white 3	0.040
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.149
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.123
	CRR073316	Gold flowering 2	0.086
	CRR073317	Gold flowering 3	0.478
	CRR073318	Tawny withering 1	0.406
	CRR073319	Tawny withering 2	0.145
	CRR073320	Tawny withering 3	0.118