Gene detail

Detail information of GWHGAAZE027050

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264437.1	2.3079E-113	PREDICTED: probable glutathione S-transferase [Vitis vinifera]
COG	YP_007096787.1	5E-22	glutathione S-transferase
Swissprot	tr\|P49332\|GSTXC_TOBAC	2E-108	Probable glutathione S-transferase parC
trEMBL	tr\|F6HR78\|F6HR78_VITVI	9E-114	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57186.1}
TAIR10	AT1G78380.1	6E-80	glutathione S-transferase TAU 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14065074	14067789	+
GWHAAZE00000008	mRNA	14065074	14067789	+
GWHAAZE00000008	exon	14065074	14065393	+
GWHAAZE00000008	exon	14066468	14066756	+
GWHAAZE00000008	exon	14067445	14067789	+
GWHAAZE00000008	CDS	14065074	14065393	+
GWHAAZE00000008	CDS	14066468	14066756	+
GWHAAZE00000008	CDS	14067445	14067789	+

Transcript Sequence
>GWHTAAZE027084 ATGCTGGTATATGATCATGGAGCTAAGAAATGGAAAACAAAAGGTGAAGAACAAGAGGAAATCAAGAAAAGGTTAATTGAGTGCCTAAAATTGCTAGAGGGAGAGCTTGGGGACAAGCCTTACTTTGGAGGTGAGAGCTTTGGATATTTGGACATAGCTTTGGTCCCATTTTACAGCTGGTTTTACACCTACGAAACCTTTGGAAAATTCAGCATAGAGGCAGAGTGCCCCACTGTCCCCACATTGATAGGGAGGGTCAAGAGGTGCATGGACAAGGAGAGTGTCTTAAAGTCCCTTGGTTCTTCTCTTGAAAAAGAAGCATTTTTGGCCAAGTATGTTTGGTATGAGGCTAAGGGTTGCTCTAGCAGAGAAGGTGTAAATTACGAGTATAAGGAAGAGGATTTGAGTAACAAGAGCGCACTTTTGTTGAAGATGAACCCGGTTCACAAGAAAATTCCGGTTCTTATTCACAATGGTAAACCGGTCTGTGAATCACTCATAGCAGTCCAGTACATTGATGAGGTGTGGAAGGATAAAGCTCCATTGTTGCCTTCTGATCCTTACCAGAGAGCTCAAGCCAGGTTCTGGGCCGACTATGTTGACAAGAAGCTATACACACTAGGTAGTAAGGTATGGCAAACAAAAGGAGAAGAACAAGAGGCAAGCAAGAAGGAGTTCTTAGATTGCCTAAAATTGCTAGAGGGAGAGCTTGGAGACAAGCCTTATTTTGGAGGTGAGACGTTTGGGTTTGTAGATGTATCTCTCATCACATTTTACAGCTGGTTTTACGCATACGAGACCTTTGGGAACTTCAGTATAGAAGCAGATTGCCCTAAGTTGATAGAATGGGTGAAGAGGTGCATGGAGAAGGAGAGTGTTTCCAAGTCCATTCCTGACCCTCACAAGGTCTATGAGTTTGTTCTGCAGCTCAAAAAGAAGTTTGGAATTGAGTAG

Network for GWHGAAZE027050

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13410.7	GST_C_2	19	73	1.60E-09
PF02798.21	GST_N	125	174	5.60E-11
PF13410.7	GST_C_2	220	286	3.40E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.003
	SRR3591706	second leaf	14.074
	SRR3591707	mature leaf	61.536
	SRR3591708	Shoot apex	3.986
	SRR3591709	Stem	3.714
	SRR3591710	White floral bud	12.711
	SRR3591711	White flower	241.785
	SRR3591712	Green floral bud	81.293
	SRR3591713	Yellow flower	576.317
SRP173429	SRR8316895	Juvenile bud stage	13.223
	SRR8316896	Juvenile bud stage	59.962
	SRR8316897	Juvenile bud stage	25.029
	SRR8316894	Third green stage	26.008
	SRR8316900	Third green stage	111.817
	SRR8316901	Third green stage	86.312
	SRR8316898	Complete white stage	24.164
	SRR8316899	Complete white stage	21.253
	SRR8316903	Complete white stage	25.733
	SRR8316902	Silver flowering stage	126.473
	SRR8316904	Silver flowering stage	158.110
	SRR8316905	Silver flowering stage	99.011
	SRR8316906	Gold flowering stage	508.547
	SRR8316907	Gold flowering stage	375.212
	SRR8316908	Gold flowering stage	491.465
SRP132670	SRR6706286	Control	98.570
	SRR6706287	Light intensity 50%	103.377
	SRR6706288	Light intensity 20%	94.582
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.765
	CNS0095593	Slightly white alabastrum(diploid) 2	65.795
	CNS0095594	Slightly white alabastrum(diploid) 3	124.432
	CNS0095595	Whole white alabastrum(diploid) 2	72.830
	CNS0095596	Whole white alabastrum(diploid) 3	53.484
	CNS0095597	Whole white alabastrum(diploid) 4	90.049
	CNS0095598	Silvery flower (diploied) 1	87.635
	CNS0095599	Silvery flower (diploied) 2	97.925
	CNS0095600	Silvery flower (diploied) 3	155.919
	CNS0095601	Golden flower (diploid) 1	162.111
	CNS0095602	Golden flower (diploid) 2	368.919
	CNS0095603	Golden flower (diploid) 3	366.333
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.940
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.051
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.972
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.039
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.009
	CNS0095609	Whole white alabastrum(tetraploid) 3	146.765
	CNS0095610	Silvery flower (tetraploid) 1	362.486
	CNS0095611	Silvery flower (tetraploid) 2	217.804
	CNS0095612	Silvery flower (tetraploid) 3	150.323
	CNS0095613	Golden flower (tetraploid) 1	815.342
	CNS0095614	Golden flower (tetraploid) 2	1045.435
	CNS0095615	Golden flower (tetraploid) 3	525.448
CRA001975	CRR073297	Stem 1	34.414
	CRR073298	Stem 2	64.011
	CRR073299	Stem 3	58.713
	CRR073300	Leaf 1	46.524
	CRR073301	Leaf 2	42.996
	CRR073302	Leaf 3	59.320
	CRR073303	Juvenile bud 1	16.819
	CRR073304	Juvenile bud 2	29.767
	CRR073305	Juvenile bud 3	14.299
	CRR073306	Third green 1	22.700
	CRR073307	Third green 2	26.574
	CRR073308	Third green 3	22.630
	CRR073309	Second white 1	471.865
	CRR073310	Second white 2	366.103
	CRR073311	Second white 3	314.638
	CRR073312	Silver flowering 1	469.404
	CRR073313	Silver flowering 2	644.707
	CRR073314	Silver flowering 3	447.792
	CRR073315	Gold flowering 1	396.712
	CRR073316	Gold flowering 2	379.915
	CRR073317	Gold flowering 3	297.441
	CRR073318	Tawny withering 1	124.292
	CRR073319	Tawny withering 2	181.324
	CRR073320	Tawny withering 3	55.990