Gene detail

Detail information of GWHGAAZE027057

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009354832.1	0	PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [Pyrus x bretschneideri]
COG	YP_003890366.1	2E-119	FMN-dependent alpha-hydroxy acid dehydrogenase
Swissprot	tr\|Q9LRR9\|GLO1_ARATH	0	Peroxisomal (S)-2-hydroxy-acid oxidase GLO1
trEMBL	tr\|D7EZN6\|D7EZN6_9ASTR	0	Glycolate oxidase {ECO:0000313\|EMBL:ACD93720.1}
TAIR10	AT3G14420.2	0	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14101613	14104883	+
GWHAAZE00000008	mRNA	14101613	14104883	+
GWHAAZE00000008	exon	14101613	14101749	+
GWHAAZE00000008	exon	14102068	14102192	+
GWHAAZE00000008	exon	14102468	14102514	+
GWHAAZE00000008	exon	14102868	14102945	+
GWHAAZE00000008	exon	14103057	14103181	+
GWHAAZE00000008	exon	14103485	14103551	+
GWHAAZE00000008	exon	14103647	14103709	+
GWHAAZE00000008	exon	14103831	14103900	+
GWHAAZE00000008	exon	14103995	14104095	+
GWHAAZE00000008	exon	14104236	14104340	+
GWHAAZE00000008	exon	14104692	14104883	+
GWHAAZE00000008	CDS	14101613	14101749	+
GWHAAZE00000008	CDS	14102068	14102192	+
GWHAAZE00000008	CDS	14102468	14102514	+
GWHAAZE00000008	CDS	14102868	14102945	+
GWHAAZE00000008	CDS	14103057	14103181	+
GWHAAZE00000008	CDS	14103485	14103551	+
GWHAAZE00000008	CDS	14103647	14103709	+
GWHAAZE00000008	CDS	14103831	14103900	+
GWHAAZE00000008	CDS	14103995	14104095	+
GWHAAZE00000008	CDS	14104236	14104340	+
GWHAAZE00000008	CDS	14104692	14104883	+

Transcript Sequence
>GWHTAAZE027091 ATGGAGGTGACCAATGTTTCCGAGTATCAGGCTATTGCCAAGGAAAAGTTGCCGAAGATGGTATATGACTACTATGCATCAGGTGCAGAGGACCAGTGGACACTTGAGGAGAACAGAAATGCTTTCTCAAGAATTCTGTTTCGACCCCGTATTCTTATTGACGTGACCAAGATAGACATGGCCACCACTGTGTTGGGCTTCAAGATTTCTATGCCCATTATGATTGCCCCAACAGCCATGCAGAAAATGGCTCACCCCGAAGGAGAGTATGCAACAGCTAGAGCCGCATCTGCGGCTGGAACAATTATGACTTTGTCATCATGGGCCACATCTAGTGTTGAAGAGGTTGCTTCAACAGGACCCGGCATTCGCTTTTTCCAGCTTTATGTGTATAAAGACAGGAATGTTGTTGCTCAGCTTGTGAGAAGAGCTGAAAAGGCTGGATTCAAGGCAATAGCTCTTACCGTTGATACCCCAAGGCTGGGACGCAGAGAAGCAGACATCAAGAACAGATTTACTTTGCCACCATTTTTGACATTGAAGAACTTCGAGGGTTTGGACCTTGGCAAGATGGATGAAGCTAATGACTCTGGATTAGGTTCATATGTTGCTGGTCAAATTGACCGCTCCTTGAGCTGGAAGGATGTGAAGTGGCTTCAGACAATCACCAAATTACCAATCCTAGTGAAGGGTGTAATCACTGCTGAGGACACAAGGCTAGCTGTACAAGCAGGAGCAGCTGGTATTATTGTGTCGAATCATGGTGCCCGTCAACTTGATTATGTTCCCGCCACTATCATGGCTCTGGAAGAGGTTGTAAAAGCTGCACAAGGCCGTGTACCAGTGTTCTTGGATGGTGGGGTCCGTCGTGGAACAGATGTCTTCAAGGCACTTGCACTTGGAGCCTCCGGAATATTTATTGGACGACCTGTGGTGTTTTCATTGGCTGCTGAAGGAGAATGCGGTGTCAAAAAAGTACTTCAGATGCTACGGGATGAGTTTGAGTTAACTATGGCGCTAAGCGGTTGCCGTTCGCTCAAAGAAATCACCCGTAATCACATTGTGACTGACTGGGACGTTCCTCGTCCTCTCCTTGCACCCAAGTTATAA

Network for GWHGAAZE027057

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01070.19	FMN_dh	13	355	6.30E-137

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11517	HAO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	82.436
	SRR3591706	second leaf	847.646
	SRR3591707	mature leaf	1092.139
	SRR3591708	Shoot apex	250.531
	SRR3591709	Stem	67.682
	SRR3591710	White floral bud	10.802
	SRR3591711	White flower	14.358
	SRR3591712	Green floral bud	13.617
	SRR3591713	Yellow flower	3.815
SRP173429	SRR8316895	Juvenile bud stage	69.955
	SRR8316896	Juvenile bud stage	66.410
	SRR8316897	Juvenile bud stage	50.133
	SRR8316894	Third green stage	23.488
	SRR8316900	Third green stage	43.516
	SRR8316901	Third green stage	35.714
	SRR8316898	Complete white stage	3.240
	SRR8316899	Complete white stage	22.619
	SRR8316903	Complete white stage	9.425
	SRR8316902	Silver flowering stage	4.751
	SRR8316904	Silver flowering stage	6.479
	SRR8316905	Silver flowering stage	2.837
	SRR8316906	Gold flowering stage	12.841
	SRR8316907	Gold flowering stage	10.635
	SRR8316908	Gold flowering stage	8.017
SRP132670	SRR6706286	Control	64.270
	SRR6706287	Light intensity 50%	49.036
	SRR6706288	Light intensity 20%	53.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.590
	CNS0095593	Slightly white alabastrum(diploid) 2	25.576
	CNS0095594	Slightly white alabastrum(diploid) 3	34.559
	CNS0095595	Whole white alabastrum(diploid) 2	28.783
	CNS0095596	Whole white alabastrum(diploid) 3	29.113
	CNS0095597	Whole white alabastrum(diploid) 4	20.567
	CNS0095598	Silvery flower (diploied) 1	74.756
	CNS0095599	Silvery flower (diploied) 2	62.465
	CNS0095600	Silvery flower (diploied) 3	32.621
	CNS0095601	Golden flower (diploid) 1	76.489
	CNS0095602	Golden flower (diploid) 2	56.383
	CNS0095603	Golden flower (diploid) 3	58.597
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.249
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.650
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.901
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.893
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.895
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.916
	CNS0095610	Silvery flower (tetraploid) 1	33.596
	CNS0095611	Silvery flower (tetraploid) 2	62.337
	CNS0095612	Silvery flower (tetraploid) 3	36.954
	CNS0095613	Golden flower (tetraploid) 1	17.280
	CNS0095614	Golden flower (tetraploid) 2	30.751
	CNS0095615	Golden flower (tetraploid) 3	21.041
CRA001975	CRR073297	Stem 1	173.313
	CRR073298	Stem 2	129.817
	CRR073299	Stem 3	168.561
	CRR073300	Leaf 1	46.647
	CRR073301	Leaf 2	50.667
	CRR073302	Leaf 3	52.131
	CRR073303	Juvenile bud 1	35.490
	CRR073304	Juvenile bud 2	19.461
	CRR073305	Juvenile bud 3	35.215
	CRR073306	Third green 1	4.816
	CRR073307	Third green 2	2.830
	CRR073308	Third green 3	5.053
	CRR073309	Second white 1	10.719
	CRR073310	Second white 2	5.516
	CRR073311	Second white 3	5.555
	CRR073312	Silver flowering 1	5.022
	CRR073313	Silver flowering 2	5.978
	CRR073314	Silver flowering 3	6.670
	CRR073315	Gold flowering 1	2195.854
	CRR073316	Gold flowering 2	2578.477
	CRR073317	Gold flowering 3	2329.483
	CRR073318	Tawny withering 1	111.032
	CRR073319	Tawny withering 2	139.440
	CRR073320	Tawny withering 3	88.103