Gene detail

Detail information of GWHGAAZE027058

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007214657.1	9.5043E-106	hypothetical protein PRUPE_ppa002804mg [Prunus persica]
COG	YP_007150314.1	4E-23	lignostilbene-alpha,beta-dioxygenase-like enzyme
Swissprot	tr\|O49505\|NCED2_ARATH	2E-95	9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic (Precursor)
trEMBL	tr\|M5WRK7\|M5WRK7_PRUPE	4E-106	Uncharacterized protein {ECO:0000313\|EMBL:EMJ15856.1}
TAIR10	AT4G18350.1	5E-81	nine-cis-epoxycarotenoid dioxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14122712	14124969	-
GWHAAZE00000008	mRNA	14122712	14124969	-
GWHAAZE00000008	exon	14122712	14122970	-
GWHAAZE00000008	exon	14123377	14123688	-
GWHAAZE00000008	exon	14124406	14124632	-
GWHAAZE00000008	exon	14124790	14124969	-
GWHAAZE00000008	CDS	14124790	14124969	-
GWHAAZE00000008	CDS	14124406	14124632	-
GWHAAZE00000008	CDS	14123377	14123688	-
GWHAAZE00000008	CDS	14122712	14122970	-

Transcript Sequence
>GWHTAAZE027092 ATGGTCTTAGACGCGCTCGAGAGGGCGGTCACCTCACGCGAGCGCCAAGCTCCTTATCCCAAAACATCAGACCCACGTGTCCAAATCACCGGCAACTTCGCTCCGGTGCCGGAACAACCCGTCCACTTCTCACTTCTGGCACCGGAAAAATACCCAAATCCATTGCCGGCGTTTACATTCGCCGGTTTTCCAAAAGCCATCGGCGAACTCCATGGCCACTCCGGCATAGTCCGGCTTTTACTCTTTTATGCCCGTGGCTTATTTGGGCTCGTCGATCACAGTCAAGGCATCGGCGTGGCTAACGCAGGCTTGGTTTATTTCAATAACCGACTACTTGCCATGTCCGAAGATGATTTGCCGTACCAAATCAAAATCACCGGCACCGGCGAGCTCAAAACAATCGGAAGTTACAATTTCGATAATCAGCTAAGTTCCGATTCCACAATGATTGCTCATCCGAAAGTCGACCCTGTTACCGGTGAGCTATTTACTCTCAGTTACAACGCGATCCACAAACCCTACCTCAAATATTTCAAATTCTCCCCAAATGGTACCAAATCCCCAGATGTAGAAATTCAGCTCAATCAACCAACTATGATGCACGATTTTGCAATTACTGAGAATTACGTAATAATCCCAGATCAGCAACTGGTTTTCAACATCTCCGAAATGATCGCGGGTGGGTCACCATTGATTTTTGACAAGAAAAAAGTTCCAAGTAAGAAGTATTTCTATGGAGATGAAATGTATGGAGGTGAGCCACTGTTTCTAAACAGAGAGCCTAATAGTTATGCTATTGAAGATGATGAGTATGCATGTTTAGCCTTTGTTCATAATGAGAGGAACTTGGAATCGGAGCTTCGGATAGTAAATGCAGTCTCATTAGAGGTAGAGGCTGTAATTAAGCTTCCGTGGAGAGTACCTTATGGTTTTCATGGTACGTTTGTAAGGGAGAAAGATTTGGCAAATCAGTCTTAA

Network for GWHGAAZE027058

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.16	RPE65	90	237	7.40E-34
PF03055.16	RPE65	243	316	3.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09840	NCED	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.014
	SRR3591706	second leaf	0.350
	SRR3591707	mature leaf	1.606
	SRR3591708	Shoot apex	0.616
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.203
	SRR3591711	White flower	0.332
	SRR3591712	Green floral bud	1.145
	SRR3591713	Yellow flower	0.734
SRP173429	SRR8316895	Juvenile bud stage	0.095
	SRR8316896	Juvenile bud stage	0.923
	SRR8316897	Juvenile bud stage	0.443
	SRR8316894	Third green stage	0.306
	SRR8316900	Third green stage	0.374
	SRR8316901	Third green stage	0.339
	SRR8316898	Complete white stage	0.142
	SRR8316899	Complete white stage	0.261
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.047
	SRR8316904	Silver flowering stage	0.072
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.278
	SRR8316907	Gold flowering stage	0.034
	SRR8316908	Gold flowering stage	0.162
SRP132670	SRR6706286	Control	0.406
	SRR6706287	Light intensity 50%	0.440
	SRR6706288	Light intensity 20%	0.305
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.499
	CNS0095593	Slightly white alabastrum(diploid) 2	0.042
	CNS0095594	Slightly white alabastrum(diploid) 3	1.561
	CNS0095595	Whole white alabastrum(diploid) 2	0.126
	CNS0095596	Whole white alabastrum(diploid) 3	0.085
	CNS0095597	Whole white alabastrum(diploid) 4	0.123
	CNS0095598	Silvery flower (diploied) 1	0.262
	CNS0095599	Silvery flower (diploied) 2	0.268
	CNS0095600	Silvery flower (diploied) 3	0.163
	CNS0095601	Golden flower (diploid) 1	0.261
	CNS0095602	Golden flower (diploid) 2	0.179
	CNS0095603	Golden flower (diploid) 3	0.206
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.411
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.055
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.839
	CNS0095610	Silvery flower (tetraploid) 1	0.260
	CNS0095611	Silvery flower (tetraploid) 2	0.040
	CNS0095612	Silvery flower (tetraploid) 3	0.409
	CNS0095613	Golden flower (tetraploid) 1	0.069
	CNS0095614	Golden flower (tetraploid) 2	0.021
	CNS0095615	Golden flower (tetraploid) 3	0.179
CRA001975	CRR073297	Stem 1	0.479
	CRR073298	Stem 2	0.515
	CRR073299	Stem 3	0.924
	CRR073300	Leaf 1	0.534
	CRR073301	Leaf 2	0.392
	CRR073302	Leaf 3	0.060
	CRR073303	Juvenile bud 1	0.116
	CRR073304	Juvenile bud 2	0.157
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.089
	CRR073307	Third green 2	0.078
	CRR073308	Third green 3	0.017
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.005
	CRR073312	Silver flowering 1	0.038
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.309
	CRR073315	Gold flowering 1	0.560
	CRR073316	Gold flowering 2	0.986
	CRR073317	Gold flowering 3	0.034
	CRR073318	Tawny withering 1	0.421
	CRR073319	Tawny withering 2	0.631
	CRR073320	Tawny withering 3	0.011