Gene detail

Detail information of GWHGAAZE027079

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010241323.1	1.0495E-87	PREDICTED: mitochondrial inner membrane protease subunit 1 [Nelumbo nucifera]
COG	YP_076274.1	2E-17	signal peptidase I
Swissprot	tr\|Q8H0W1\|PLSP1_ARATH	8E-11	Chloroplast processing peptidase (Precursor)
trEMBL	tr\|E0CRZ1\|E0CRZ1_VITVI	5E-86	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20090.3}
TAIR10	AT1G53530.1	2E-58	Peptidase S24/S26A/S26B/S26C family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14445839	14448593	-
GWHAAZE00000008	mRNA	14445839	14448593	-
GWHAAZE00000008	exon	14448483	14448593	-
GWHAAZE00000008	exon	14448128	14448352	-
GWHAAZE00000008	exon	14447099	14447209	-
GWHAAZE00000008	exon	14445839	14446114	-
GWHAAZE00000008	CDS	14448483	14448593	-
GWHAAZE00000008	CDS	14448128	14448352	-
GWHAAZE00000008	CDS	14447099	14447209	-
GWHAAZE00000008	CDS	14446082	14446114	-
GWHAAZE00000008	three_prime_UTR	14445839	14446081	-

Transcript Sequence
>GWHTAAZE027113 ATGACTCCATGGAAGACCTTGGCGAAGGAAGTAATAGAGAGAGGAATGATAGTCGCAAGGTTCTTCTGCTTGCTCCACGTCACTAATAACTACATCTGTTCCCCTACCCTCGTTTACGGTCCAAGTATGCTCCCGACCCTGAATCTTACCGGCGACGTGTTATTGTCGGAGCACATATCGTCGCGGCTGGGGAAATTGGTTACCGGAGATTTGGTCCTTGTTACTTCACCTGAAAACCCTAGAAGGACTGTAACTAAGCGTATTTTGGGTATGGAAGGAGATTCTGTTACTTTCTTGGTCGACCCCTCTAACTCCGACCGATGTCTCTCTGTTGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGACAACATCTATGCATCTAACGATTCACGGCATTTTGGGCCTATTCCTTATGGCCTTATTCAAGGCAAAGTGTGGTATAGAGTATGGCCACCGGATGGCTTTGGATCATTGTGACGATGAACATAACAGACATTGTACTTCAATCATTGGGTTTAGGGATTATTTATCACTTCATTTTTTGCTTTTAAATCATCGTTGGAGTTGTATACTTTTCGCTTTGGAAATGAATCCAGATGAGATGATCTCTAGTATTGGTTGAAGCGTTTAGGGTTTTGAATGTGAAAACCAAGACATTATGAATATTCTCATTCCTCAGGAATTGTTTATAATTTGAGTGCTTCCATGGTTTTCAGAAGA

Network for GWHGAAZE027079

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10502.10	Peptidase_S26	17	98	1.90E-11
PF10502.10	Peptidase_S26	110	151	5.50E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09647	IMP1	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0008236	molecular_function	serine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.060
	SRR3591706	second leaf	13.041
	SRR3591707	mature leaf	15.383
	SRR3591708	Shoot apex	23.488
	SRR3591709	Stem	18.118
	SRR3591710	White floral bud	16.176
	SRR3591711	White flower	19.970
	SRR3591712	Green floral bud	19.734
	SRR3591713	Yellow flower	16.719
SRP173429	SRR8316895	Juvenile bud stage	16.979
	SRR8316896	Juvenile bud stage	23.334
	SRR8316897	Juvenile bud stage	11.932
	SRR8316894	Third green stage	8.261
	SRR8316900	Third green stage	33.535
	SRR8316901	Third green stage	31.026
	SRR8316898	Complete white stage	14.388
	SRR8316899	Complete white stage	44.451
	SRR8316903	Complete white stage	20.043
	SRR8316902	Silver flowering stage	16.497
	SRR8316904	Silver flowering stage	15.030
	SRR8316905	Silver flowering stage	8.736
	SRR8316906	Gold flowering stage	26.520
	SRR8316907	Gold flowering stage	35.211
	SRR8316908	Gold flowering stage	29.691
SRP132670	SRR6706286	Control	18.486
	SRR6706287	Light intensity 50%	21.275
	SRR6706288	Light intensity 20%	22.659
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.143
	CNS0095593	Slightly white alabastrum(diploid) 2	34.922
	CNS0095594	Slightly white alabastrum(diploid) 3	26.469
	CNS0095595	Whole white alabastrum(diploid) 2	27.227
	CNS0095596	Whole white alabastrum(diploid) 3	28.113
	CNS0095597	Whole white alabastrum(diploid) 4	23.087
	CNS0095598	Silvery flower (diploied) 1	24.727
	CNS0095599	Silvery flower (diploied) 2	19.767
	CNS0095600	Silvery flower (diploied) 3	24.580
	CNS0095601	Golden flower (diploid) 1	18.395
	CNS0095602	Golden flower (diploid) 2	19.605
	CNS0095603	Golden flower (diploid) 3	19.718
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.708
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.815
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.899
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.328
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.239
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.695
	CNS0095610	Silvery flower (tetraploid) 1	19.159
	CNS0095611	Silvery flower (tetraploid) 2	23.919
	CNS0095612	Silvery flower (tetraploid) 3	22.175
	CNS0095613	Golden flower (tetraploid) 1	14.953
	CNS0095614	Golden flower (tetraploid) 2	17.253
	CNS0095615	Golden flower (tetraploid) 3	14.943
CRA001975	CRR073297	Stem 1	20.689
	CRR073298	Stem 2	24.005
	CRR073299	Stem 3	19.556
	CRR073300	Leaf 1	17.591
	CRR073301	Leaf 2	22.677
	CRR073302	Leaf 3	25.327
	CRR073303	Juvenile bud 1	19.785
	CRR073304	Juvenile bud 2	15.370
	CRR073305	Juvenile bud 3	13.656
	CRR073306	Third green 1	5.388
	CRR073307	Third green 2	5.998
	CRR073308	Third green 3	5.495
	CRR073309	Second white 1	9.251
	CRR073310	Second white 2	8.173
	CRR073311	Second white 3	5.349
	CRR073312	Silver flowering 1	3.600
	CRR073313	Silver flowering 2	4.184
	CRR073314	Silver flowering 3	2.441
	CRR073315	Gold flowering 1	17.010
	CRR073316	Gold flowering 2	13.085
	CRR073317	Gold flowering 3	10.324
	CRR073318	Tawny withering 1	13.097
	CRR073319	Tawny withering 2	11.349
	CRR073320	Tawny withering 3	10.517