Gene detail

Detail information of GWHGAAZE027082

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN73058.1	0	hypothetical protein VITISV_007599 [Vitis vinifera]
COG	YP_002773918.1	3E-54	ribokinase
Swissprot	tr\|P37829\|SCRK_SOLTU	2E-18	Fructokinase
trEMBL	tr\|A5C4V0\|A5C4V0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73058.1}
TAIR10	AT1G17160.1	2E-127	pfkB-like carbohydrate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14481215	14483310	+
GWHAAZE00000008	mRNA	14481215	14483310	+
GWHAAZE00000008	exon	14481215	14481805	+
GWHAAZE00000008	exon	14482589	14482774	+
GWHAAZE00000008	exon	14482930	14483125	+
GWHAAZE00000008	exon	14483219	14483310	+
GWHAAZE00000008	CDS	14481215	14481805	+
GWHAAZE00000008	CDS	14482589	14482774	+
GWHAAZE00000008	CDS	14482930	14483125	+
GWHAAZE00000008	CDS	14483219	14483310	+

Transcript Sequence
>GWHTAAZE027116 ATGAATCAATCCAATCAAACCCCAAACTCAAAACCAAATCAATTCAACACAAAACCCAATAACCTTTCAACAACAAGAAGAGTAAACCCGCTTCCAATCTTGGCCTTCAATTCCTCCAAAACCTCAAATCAACCCACCCAAAATCCGCCACTCGTAGTCGTCGGATCAGCCAATGCAGACATCTACGTCGAAATTGATAGGCTCCCAAAAGAGGGGGAAACTATATCAGCCCACAATGGCCAAACCCTAGCCGGCGGCAAGGGTGCAAACCAGGCTGTGTGCGGGGGCAAGCTTTGCCACCCCACTTATTTTGTGGGTCAAATTGGTGAGGATGCTCATGGGAAATTAATTGCTGATGCACTTGAAAGTGGTGGGGTTAAAATTGACTACTTGTGTACAGTTGGCGGTGATGTGCCAACTGGGCATGCTGTGGTGATGTTGCAAAATGATGGGCAGAATTCTATTATCATTGTTGGGGGTGCTAATATGTGTTGTTGGCCTGACAATTTGTCTTTGGAGATTGTCAAGAATGCTGGGATTGTTTTGCTTCAAAGGGAGATTCCTGAATATGTTAACATTCAAGTTGCTAAGGCTGCCAGGAGTGCACGTGTTCCGGTCATTTTGGATGCTGGGGGAGTGGATTCACCTATCCCGCCAGAATTGCTTAAATCCATCAATATTTTGAGCCCAAATGAAACTGAACTTGCCCGTTTGACGGGAATGCCTACTGAAACTTTTGAACAGATTAGTCAAGCTGTGGTCAAATGCCATCAACTGGGTGTTAAGGAAGTCCTAGTGAAACTCGGGGCAAAAGGGTCAGCTTTATTCACCGAAGGAGAGGAACCAATCAAACAACCAATCATATCGGCTGCCAAAGTACTTGATACAACTGGAGCTGGTGATACTTTTACTGCTGCTTTTGCGGTGTCTCTAGTTGAGGGGAAAAGCAAAAAGGAATGCTTAAGATTTGCTGCTGCAGCTGCCTCTCTCTGTGTTCAAGTGAAAGGAGCTATTCCAAGCATGCCTGACAGGAAATCAGTTTTGGATCTTCTTGGTTCTCTTTGA

Network for GWHGAAZE027082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0086

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00294.25	PfkB	51	343	3.90E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00852	rbsK, RBKS	Metabolic pathways	map01100
K00852	rbsK, RBKS	Pentose phosphate pathway	map00030

Gene Ontology

GO term	Ontology	Name
GO:0006014	biological_process	D-ribose metabolic process
GO:0004747	molecular_function	ribokinase activity
GO:0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor
GO:0016301	molecular_function	kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.122
	SRR3591706	second leaf	18.829
	SRR3591707	mature leaf	14.559
	SRR3591708	Shoot apex	25.439
	SRR3591709	Stem	25.540
	SRR3591710	White floral bud	36.714
	SRR3591711	White flower	49.424
	SRR3591712	Green floral bud	36.581
	SRR3591713	Yellow flower	47.595
SRP173429	SRR8316895	Juvenile bud stage	17.557
	SRR8316896	Juvenile bud stage	32.061
	SRR8316897	Juvenile bud stage	14.874
	SRR8316894	Third green stage	14.927
	SRR8316900	Third green stage	39.971
	SRR8316901	Third green stage	35.727
	SRR8316898	Complete white stage	14.583
	SRR8316899	Complete white stage	35.266
	SRR8316903	Complete white stage	18.147
	SRR8316902	Silver flowering stage	15.342
	SRR8316904	Silver flowering stage	21.230
	SRR8316905	Silver flowering stage	10.663
	SRR8316906	Gold flowering stage	35.458
	SRR8316907	Gold flowering stage	33.596
	SRR8316908	Gold flowering stage	33.003
SRP132670	SRR6706286	Control	53.421
	SRR6706287	Light intensity 50%	51.685
	SRR6706288	Light intensity 20%	52.780
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.752
	CNS0095593	Slightly white alabastrum(diploid) 2	20.982
	CNS0095594	Slightly white alabastrum(diploid) 3	27.243
	CNS0095595	Whole white alabastrum(diploid) 2	20.463
	CNS0095596	Whole white alabastrum(diploid) 3	25.274
	CNS0095597	Whole white alabastrum(diploid) 4	23.154
	CNS0095598	Silvery flower (diploied) 1	16.812
	CNS0095599	Silvery flower (diploied) 2	15.870
	CNS0095600	Silvery flower (diploied) 3	38.893
	CNS0095601	Golden flower (diploid) 1	19.053
	CNS0095602	Golden flower (diploid) 2	32.857
	CNS0095603	Golden flower (diploid) 3	32.400
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.821
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.446
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.531
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.725
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.138
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.871
	CNS0095610	Silvery flower (tetraploid) 1	43.594
	CNS0095611	Silvery flower (tetraploid) 2	47.896
	CNS0095612	Silvery flower (tetraploid) 3	27.425
	CNS0095613	Golden flower (tetraploid) 1	26.576
	CNS0095614	Golden flower (tetraploid) 2	41.717
	CNS0095615	Golden flower (tetraploid) 3	28.646
CRA001975	CRR073297	Stem 1	31.891
	CRR073298	Stem 2	29.024
	CRR073299	Stem 3	28.910
	CRR073300	Leaf 1	37.797
	CRR073301	Leaf 2	34.555
	CRR073302	Leaf 3	32.045
	CRR073303	Juvenile bud 1	41.202
	CRR073304	Juvenile bud 2	33.825
	CRR073305	Juvenile bud 3	38.547
	CRR073306	Third green 1	14.224
	CRR073307	Third green 2	14.599
	CRR073308	Third green 3	16.662
	CRR073309	Second white 1	12.769
	CRR073310	Second white 2	19.844
	CRR073311	Second white 3	15.283
	CRR073312	Silver flowering 1	11.643
	CRR073313	Silver flowering 2	10.031
	CRR073314	Silver flowering 3	11.087
	CRR073315	Gold flowering 1	14.763
	CRR073316	Gold flowering 2	14.166
	CRR073317	Gold flowering 3	9.769
	CRR073318	Tawny withering 1	18.213
	CRR073319	Tawny withering 2	12.655
	CRR073320	Tawny withering 3	13.294