Detail information of GWHGAAZE027088


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010675264.12.99618E-61PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Beta vulgaris subsp. vulgaris]
COGYP_006370589.11E-23dtdp-glucose 4,6-dehydratase
Swissprottr|Q9LH76|RHM3_ARATH4E-62UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000305|PubMed:17190829}
trEMBLtr|Q10N91|Q10N91_ORYSJ9E-62Rhamnose biosynthetic enzyme 1, putative, expressed {ECO:0000313|EMBL:ABF95280.1}
TAIR10AT3G14790.12E-53rhamnose biosynthesis 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1455545814555969+
GWHAAZE00000008mRNA1455545814555969+
GWHAAZE00000008exon1455545814555561+
GWHAAZE00000008exon1455565714555969+
GWHAAZE00000008CDS1455545814555561+
GWHAAZE00000008CDS1455565714555969+
Transcript Sequence

Network for GWHGAAZE027088

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16363.6GDP_Man_Dehyd371306.70E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12450RHM Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.231
SRR3591706second leaf106.880
SRR3591707mature leaf11.762
SRR3591708Shoot apex58.883
SRR3591709Stem6.956
SRR3591710White floral bud23.294
SRR3591711White flower9.381
SRR3591712Green floral bud54.334
SRR3591713Yellow flower2.869
SRP173429 SRR8316895Juvenile bud stage 30.378
SRR8316896Juvenile bud stage 34.839
SRR8316897Juvenile bud stage 13.090
SRR8316894Third green stage 20.382
SRR8316900Third green stage 84.899
SRR8316901Third green stage 70.029
SRR8316898Complete white stage 18.840
SRR8316899Complete white stage 43.336
SRR8316903Complete white stage 29.451
SRR8316902Silver flowering stage4.942
SRR8316904Silver flowering stage7.986
SRR8316905Silver flowering stage6.431
SRR8316906Gold flowering stage 12.630
SRR8316907Gold flowering stage 9.931
SRR8316908Gold flowering stage 8.082
SRP132670SRR6706286Control102.949
SRR6706287Light intensity 50%108.028
SRR6706288Light intensity 20%117.089
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.525
CNS0095593Slightly white alabastrum(diploid) 215.628
CNS0095594Slightly white alabastrum(diploid) 312.240
CNS0095595Whole white alabastrum(diploid) 215.917
CNS0095596Whole white alabastrum(diploid) 319.965
CNS0095597Whole white alabastrum(diploid) 414.477
CNS0095598Silvery flower (diploied) 113.069
CNS0095599Silvery flower (diploied) 218.429
CNS0095600Silvery flower (diploied) 333.644
CNS0095601Golden flower (diploid) 17.711
CNS0095602Golden flower (diploid) 221.729
CNS0095603Golden flower (diploid) 321.303
CNS0095604Slightly white alabastrum(tetraploid) 136.103
CNS0095605Slightly white alabastrum(tetraploid) 224.078
CNS0095606Slightly white alabastrum(tetraploid) 3112.942
CNS0095607Whole white alabastrum(tetraploid) 110.502
CNS0095608Whole white alabastrum(tetraploid) 211.905
CNS0095609Whole white alabastrum(tetraploid) 3111.808
CNS0095610Silvery flower (tetraploid) 119.580
CNS0095611Silvery flower (tetraploid) 227.775
CNS0095612Silvery flower (tetraploid) 310.604
CNS0095613Golden flower (tetraploid) 16.467
CNS0095614Golden flower (tetraploid) 216.004
CNS0095615Golden flower (tetraploid) 33.094
CRA001975CRR073297Stem 168.740
CRR073298Stem 269.352
CRR073299Stem 373.000
CRR073300Leaf 180.330
CRR073301Leaf 277.508
CRR073302Leaf 379.505
CRR073303Juvenile bud 169.541
CRR073304Juvenile bud 251.367
CRR073305Juvenile bud 359.613
CRR073306Third green 118.456
CRR073307Third green 213.478
CRR073308Third green 319.126
CRR073309Second white 19.244
CRR073310Second white 26.319
CRR073311Second white 36.294
CRR073312Silver flowering 15.012
CRR073313Silver flowering 28.317
CRR073314Silver flowering 35.699
CRR073315Gold flowering 116.217
CRR073316Gold flowering 217.494
CRR073317Gold flowering 320.949
CRR073318Tawny withering 18.603
CRR073319Tawny withering 22.161
CRR073320Tawny withering 37.229