Detail information of GWHGAAZE027089


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009376726.10PREDICTED: probable rhamnose biosynthetic enzyme 1 isoform X1 [Pyrus x bretschneideri]
COGYP_001938687.19E-25dTDP-4-dehydrorhamnose reductase
Swissprottr|Q9LPG6|RHM2_ARATH0UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000303|PubMed:17190829}
trEMBLtr|A0A022QFB8|A0A022QFB8_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU26294.1}
TAIR10AT1G53500.12E-159NAD-dependent epimerase/dehydratase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1455603814557523+
GWHAAZE00000008mRNA1455603814557523+
GWHAAZE00000008exon1455603814556282+
GWHAAZE00000008exon1455637714556573+
GWHAAZE00000008exon1455664614556965+
GWHAAZE00000008exon1455707914557152+
GWHAAZE00000008exon1455721714557523+
GWHAAZE00000008CDS1455603814556282+
GWHAAZE00000008CDS1455637714556573+
GWHAAZE00000008CDS1455664614556965+
GWHAAZE00000008CDS1455707914557152+
GWHAAZE00000008CDS1455721714557523+
Transcript Sequence

Network for GWHGAAZE027089

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01370.22Epimerase3442.40E-05
PF01370.22Epimerase1632658.00E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12450RHM Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0050662molecular_functioncoenzyme binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.237
SRR3591706second leaf159.158
SRR3591707mature leaf22.399
SRR3591708Shoot apex98.000
SRR3591709Stem14.474
SRR3591710White floral bud31.252
SRR3591711White flower14.833
SRR3591712Green floral bud95.347
SRR3591713Yellow flower3.899
SRP173429 SRR8316895Juvenile bud stage 51.124
SRR8316896Juvenile bud stage 70.112
SRR8316897Juvenile bud stage 26.817
SRR8316894Third green stage 35.536
SRR8316900Third green stage 169.965
SRR8316901Third green stage 141.181
SRR8316898Complete white stage 26.734
SRR8316899Complete white stage 85.919
SRR8316903Complete white stage 39.677
SRR8316902Silver flowering stage9.291
SRR8316904Silver flowering stage15.587
SRR8316905Silver flowering stage8.200
SRR8316906Gold flowering stage 20.930
SRR8316907Gold flowering stage 23.752
SRR8316908Gold flowering stage 15.741
SRP132670SRR6706286Control125.756
SRR6706287Light intensity 50%132.988
SRR6706288Light intensity 20%146.514
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.949
CNS0095593Slightly white alabastrum(diploid) 275.044
CNS0095594Slightly white alabastrum(diploid) 345.184
CNS0095595Whole white alabastrum(diploid) 277.354
CNS0095596Whole white alabastrum(diploid) 394.279
CNS0095597Whole white alabastrum(diploid) 461.497
CNS0095598Silvery flower (diploied) 137.833
CNS0095599Silvery flower (diploied) 243.968
CNS0095600Silvery flower (diploied) 352.136
CNS0095601Golden flower (diploid) 128.800
CNS0095602Golden flower (diploid) 235.594
CNS0095603Golden flower (diploid) 334.826
CNS0095604Slightly white alabastrum(tetraploid) 1107.427
CNS0095605Slightly white alabastrum(tetraploid) 281.984
CNS0095606Slightly white alabastrum(tetraploid) 3224.739
CNS0095607Whole white alabastrum(tetraploid) 143.047
CNS0095608Whole white alabastrum(tetraploid) 250.019
CNS0095609Whole white alabastrum(tetraploid) 3239.469
CNS0095610Silvery flower (tetraploid) 136.552
CNS0095611Silvery flower (tetraploid) 251.321
CNS0095612Silvery flower (tetraploid) 320.481
CNS0095613Golden flower (tetraploid) 114.204
CNS0095614Golden flower (tetraploid) 240.546
CNS0095615Golden flower (tetraploid) 34.857
CRA001975CRR073297Stem 1114.165
CRR073298Stem 2121.291
CRR073299Stem 3116.212
CRR073300Leaf 1141.181
CRR073301Leaf 2136.319
CRR073302Leaf 3135.222
CRR073303Juvenile bud 1121.141
CRR073304Juvenile bud 272.021
CRR073305Juvenile bud 3113.210
CRR073306Third green 131.843
CRR073307Third green 222.752
CRR073308Third green 327.226
CRR073309Second white 132.574
CRR073310Second white 214.893
CRR073311Second white 310.500
CRR073312Silver flowering 19.245
CRR073313Silver flowering 214.929
CRR073314Silver flowering 39.456
CRR073315Gold flowering 139.669
CRR073316Gold flowering 231.228
CRR073317Gold flowering 335.598
CRR073318Tawny withering 127.927
CRR073319Tawny withering 213.131
CRR073320Tawny withering 326.366