Gene detail

Detail information of GWHGAAZE027091

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011044569.1	0	PREDICTED: LOW QUALITY PROTEIN: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like [Populus euphratica]
COG	YP_003584979.1	6E-43	trehalose 6-phosphate synthase
Swissprot	tr\|Q9SYM4\|TPS1_ARATH	0	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
trEMBL	tr\|A0A061F834\|A0A061F834_THECC	0	Trehalose-6-phosphate synthase isoform 2 {ECO:0000313\|EMBL:EOY13530.1}
TAIR10	AT1G78580.1	2E-174	trehalose-6-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14599716	14604289	-
GWHAAZE00000008	mRNA	14599716	14604289	-
GWHAAZE00000008	exon	14599716	14599883	-
GWHAAZE00000008	exon	14601270	14601368	-
GWHAAZE00000008	exon	14601472	14601602	-
GWHAAZE00000008	exon	14601758	14601845	-
GWHAAZE00000008	exon	14602131	14602256	-
GWHAAZE00000008	exon	14602344	14602511	-
GWHAAZE00000008	exon	14602971	14603088	-
GWHAAZE00000008	exon	14603255	14603442	-
GWHAAZE00000008	exon	14603675	14603775	-
GWHAAZE00000008	exon	14604197	14604289	-
GWHAAZE00000008	five_prime_UTR	14604197	14604289	-
GWHAAZE00000008	five_prime_UTR	14603744	14603775	-
GWHAAZE00000008	CDS	14603675	14603743	-
GWHAAZE00000008	CDS	14603255	14603442	-
GWHAAZE00000008	CDS	14602971	14603088	-
GWHAAZE00000008	CDS	14602344	14602511	-
GWHAAZE00000008	CDS	14602131	14602256	-
GWHAAZE00000008	CDS	14601758	14601845	-
GWHAAZE00000008	CDS	14601472	14601602	-
GWHAAZE00000008	CDS	14601270	14601368	-
GWHAAZE00000008	CDS	14599716	14599883	-

Transcript Sequence
>GWHTAAZE027125 ATTGTAGCTTATAGAATTCTGAGGCTTTTTCTCTTTTTCTGCAGGATCGTTCTCTCGACTTTCATGCATTATGTGCACTGTATGCTGTTACTGATGTAGCAATCGTCACATCTTTGAGGGATGGAATGAATCTCGTCAGCTATGAGTTTGTTGCCTGCCAAGATTCAAAGAAAGGGGTTCTCATTCTCAGTGAATTTGCTGGTGCTGCACAGTCTCTGGGTGCTGGAGCTATCCTTGTAAATCCATGGAACATAACTGAAGTTGCTAATTCTATAAGCCAAGCCTTAAATATGTGCCCTGAAGAAAGAGAGAAGCGTCATCGCCATAACTTCCATCATGTTACTACCCATACTGCTCAAGAATGGGCTGAAACTTTTGTAAGTGAATTGGATGTCACCGTAGTTGAAGCCCAGGAAAGGATAATACATGTTACCCCTCCGCTTCCAGTAAACGAAGCGATTGAACGTTACTTGAAGTCAAAAAACCGGTTACTCATACTGGGATTTAATGCTACACTAACCGAACCAACAGATGCTCCTGGTAGAAGAGGTAGAGATCAGATTAGAGAAATGGAACTAAAATTGCATCCAGAGTTGAAAGACCCCTTGACAGCCCTCTGCAGTGATCCAAAGACGACTATCATTGTTCTTAGTGGAAGTGACAGAAAAAACTTTGGCGAGTACAATAATATGTGGTTAGCGGCCGAGAACGGAATGTTCTTACGATCTACAAAAGGGGATTGGATGACTACAATGCCTGAGCATTTAAGTATGGAATGGATTGACTCTGTGAAGCACGTGTTTGAGTATTTCACTGAGAGAACGCCACGGTCCCATTTTGAAACCCGGGAAACTTCGCTTGTATGGAATTACAAGTATGCAGATGTGGAATTTGGGAGGCTGCAAGCCAGAGACATGCTGCAGCATCTCTGGACGGGCCCTATATCTAATTCGTCAGTAGATGTCTTTCAAGGTAGCCGGTCTATTGAGGTGCGAGCGGTTGGTGTTACAAAGGGAGCAGCAATGGATCGGATTTTGGGGGAGATTGTTCACAGCAAATCTATGTCAACGCCAATCGATTATGTACTATGCATAGGCCATTTTCTGGGAAAGGACGAGGACGTGTACACATTTTTCGAGCCAGAGCTTCCCCCAGATGCCATTGTGACTCATACAAGACCGAAGCTGAACGATCCATTAAAGCAGCTGCCTTGGGAGAGAAGAGCCCTTAAGCTGCCAGGTAGCAGCAGAATCGGGTCGAAATCATCATCATCCCACAAT

Network for GWHGAAZE027091

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.22	Glyco_transf_20	1	88	5.30E-36
PF02358.17	Trehalose_PPase	147	340	2.00E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.099
	SRR3591706	second leaf	15.019
	SRR3591707	mature leaf	15.117
	SRR3591708	Shoot apex	17.378
	SRR3591709	Stem	20.210
	SRR3591710	White floral bud	10.179
	SRR3591711	White flower	10.286
	SRR3591712	Green floral bud	13.768
	SRR3591713	Yellow flower	3.147
SRP173429	SRR8316895	Juvenile bud stage	13.918
	SRR8316896	Juvenile bud stage	17.995
	SRR8316897	Juvenile bud stage	9.282
	SRR8316894	Third green stage	7.646
	SRR8316900	Third green stage	11.900
	SRR8316901	Third green stage	14.783
	SRR8316898	Complete white stage	2.569
	SRR8316899	Complete white stage	17.433
	SRR8316903	Complete white stage	4.070
	SRR8316902	Silver flowering stage	5.378
	SRR8316904	Silver flowering stage	7.917
	SRR8316905	Silver flowering stage	3.360
	SRR8316906	Gold flowering stage	11.371
	SRR8316907	Gold flowering stage	10.828
	SRR8316908	Gold flowering stage	23.011
SRP132670	SRR6706286	Control	13.644
	SRR6706287	Light intensity 50%	16.034
	SRR6706288	Light intensity 20%	13.814
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.574
	CNS0095593	Slightly white alabastrum(diploid) 2	19.763
	CNS0095594	Slightly white alabastrum(diploid) 3	14.606
	CNS0095595	Whole white alabastrum(diploid) 2	11.967
	CNS0095596	Whole white alabastrum(diploid) 3	10.123
	CNS0095597	Whole white alabastrum(diploid) 4	10.518
	CNS0095598	Silvery flower (diploied) 1	20.241
	CNS0095599	Silvery flower (diploied) 2	12.412
	CNS0095600	Silvery flower (diploied) 3	7.310
	CNS0095601	Golden flower (diploid) 1	14.258
	CNS0095602	Golden flower (diploid) 2	7.798
	CNS0095603	Golden flower (diploid) 3	7.259
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.883
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.541
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.649
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.846
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.388
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.606
	CNS0095610	Silvery flower (tetraploid) 1	7.903
	CNS0095611	Silvery flower (tetraploid) 2	9.951
	CNS0095612	Silvery flower (tetraploid) 3	11.391
	CNS0095613	Golden flower (tetraploid) 1	3.140
	CNS0095614	Golden flower (tetraploid) 2	4.600
	CNS0095615	Golden flower (tetraploid) 3	8.845
CRA001975	CRR073297	Stem 1	24.818
	CRR073298	Stem 2	24.665
	CRR073299	Stem 3	17.221
	CRR073300	Leaf 1	20.974
	CRR073301	Leaf 2	19.942
	CRR073302	Leaf 3	14.651
	CRR073303	Juvenile bud 1	13.498
	CRR073304	Juvenile bud 2	5.957
	CRR073305	Juvenile bud 3	17.522
	CRR073306	Third green 1	0.918
	CRR073307	Third green 2	0.459
	CRR073308	Third green 3	1.220
	CRR073309	Second white 1	1.055
	CRR073310	Second white 2	1.655
	CRR073311	Second white 3	1.346
	CRR073312	Silver flowering 1	0.548
	CRR073313	Silver flowering 2	0.044
	CRR073314	Silver flowering 3	0.209
	CRR073315	Gold flowering 1	10.994
	CRR073316	Gold flowering 2	17.074
	CRR073317	Gold flowering 3	10.042
	CRR073318	Tawny withering 1	13.552
	CRR073319	Tawny withering 2	19.855
	CRR073320	Tawny withering 3	18.078