Gene detail

Detail information of GWHGAAZE027093

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009762546.1	9.6208E-151	PREDICTED: NADH kinase isoform X3 [Nicotiana sylvestris]
COG	YP_008156006.1	4E-28	hypothetical protein SCE1572_48320
Swissprot	tr\|Q500Y9\|NADHK_ARATH	3E-122	NADH kinase
trEMBL	tr\|B9N7R3\|B9N7R3_POPTR	8E-148	ATP-NAD kinase family protein {ECO:0000313\|EMBL:ERP55522.1}
TAIR10	AT1G78590.1	5E-99	NAD(H) kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14632890	14635072	+
GWHAAZE00000008	mRNA	14632890	14635072	+
GWHAAZE00000008	exon	14632890	14633243	+
GWHAAZE00000008	exon	14633323	14633403	+
GWHAAZE00000008	exon	14634338	14634489	+
GWHAAZE00000008	exon	14634590	14635072	+
GWHAAZE00000008	CDS	14632890	14633243	+
GWHAAZE00000008	CDS	14633323	14633403	+
GWHAAZE00000008	CDS	14634338	14634489	+
GWHAAZE00000008	CDS	14634590	14634956	+
GWHAAZE00000008	three_prime_UTR	14634957	14635072	+

Transcript Sequence
>GWHTAAZE027127 ATGTTTCATTTTTGTAAAATTTTCTTCCTCATGAAGACCTCGCAAGTGTCAAATTATCTGGACAACAGGCGTGTAGTTCACAAAGATGCCATAAGCTTTTGTCAGAATATTTTACGGAAGAAGTTTGTTCATTGGGAACCCGTTTTTCGAAGCAATCTATCGCAACCGATCCGTGATGTGGATCTAGTGGTTACTATAGGTGGTGATGGCACGCTTTTGCAGGCAAGCCATTTTATGGATGATTCAATCCCAGTTCTAGGAGTGAATTCGGACCCCACTCAAGTTGAAGAGGTGAAGTTATATTTCTCGTTTACTTCAAATCCTCAGTCTTTGCACTGCCGTTTAAATTTTTGGGTTGAAGAATGCAATAACGAGTTTGATGCTACAAGAAGCACTGGGTATCTTTGTGCAGCTGCTGTAAAAAATTTTGAACATATACTAGACGGCATCCTTGAGGGCCGCACAGTTCCTAATGAATTATCAAGGATGTCAATCACTGTGAACACAGATATACTCTCAACGCATGCGCTTAACGATGTTTTAATTGCACACGCTTGTCCAGCAACTGTTTCTCGGTTCTCATTCAGAATTAGGAAAGACGGTCAGTCGTGTTGTCCTTTAGTGAACTGCCGATCAAGTGGTCTCAGAGTCTCAACAGCTGCTGGATCAACGGCTGCAATGCTTTCGGCTGGTGGATTCTCAATGCCTGTTTTATCCAAGGATCTCCAGTATAAGGTGCGTGAGCCTATTTTACCGAGAGTCGACGACTCCGTCTTAATGCATGGAGTTGTAAAATCTGATGAATGCATGAATATATCATGGTTTTGTAAAGATGGAGTAATCTACATTGATGGGTCTCATATTGTTCATTCTATTCAACACGGGGATACCATTGAATTATCTTCCAAAGCTCCAATTCTGAAGGTTTTTTTGCCTCATCACTTGTTATCATAGCATTGTGACATACATTTAGTCAAAAGAAATGGAAATCTGTAAAATTTACCAGGTAACGTATGAGACTTTAGCTGAAAGAATGGGGTTTATGTAAATTGTAGCAGGTAAAGTTTAAA

Network for GWHGAAZE027093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01513.22	NAD_kinase	58	89	2.10E-08
PF01513.22	NAD_kinase	132	301	1.10E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00858	ppnK, NADK	Metabolic pathways	map01100
K00858	ppnK, NADK	Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0006741	biological_process	NADP biosynthetic process
GO:0019674	biological_process	NAD metabolic process
GO:0003951	molecular_function	NAD+ kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.931
	SRR3591706	second leaf	4.758
	SRR3591707	mature leaf	7.540
	SRR3591708	Shoot apex	4.739
	SRR3591709	Stem	4.679
	SRR3591710	White floral bud	6.307
	SRR3591711	White flower	8.492
	SRR3591712	Green floral bud	8.673
	SRR3591713	Yellow flower	9.213
SRP173429	SRR8316895	Juvenile bud stage	3.258
	SRR8316896	Juvenile bud stage	5.966
	SRR8316897	Juvenile bud stage	3.263
	SRR8316894	Third green stage	1.926
	SRR8316900	Third green stage	5.858
	SRR8316901	Third green stage	5.388
	SRR8316898	Complete white stage	1.651
	SRR8316899	Complete white stage	7.530
	SRR8316903	Complete white stage	3.350
	SRR8316902	Silver flowering stage	1.782
	SRR8316904	Silver flowering stage	2.455
	SRR8316905	Silver flowering stage	1.355
	SRR8316906	Gold flowering stage	4.276
	SRR8316907	Gold flowering stage	4.655
	SRR8316908	Gold flowering stage	4.961
SRP132670	SRR6706286	Control	3.084
	SRR6706287	Light intensity 50%	3.393
	SRR6706288	Light intensity 20%	3.692
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.944
	CNS0095593	Slightly white alabastrum(diploid) 2	5.531
	CNS0095594	Slightly white alabastrum(diploid) 3	3.184
	CNS0095595	Whole white alabastrum(diploid) 2	3.603
	CNS0095596	Whole white alabastrum(diploid) 3	3.203
	CNS0095597	Whole white alabastrum(diploid) 4	2.794
	CNS0095598	Silvery flower (diploied) 1	6.864
	CNS0095599	Silvery flower (diploied) 2	3.777
	CNS0095600	Silvery flower (diploied) 3	4.767
	CNS0095601	Golden flower (diploid) 1	3.466
	CNS0095602	Golden flower (diploid) 2	3.872
	CNS0095603	Golden flower (diploid) 3	4.151
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.647
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.403
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.527
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.504
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.378
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.038
	CNS0095610	Silvery flower (tetraploid) 1	5.238
	CNS0095611	Silvery flower (tetraploid) 2	6.147
	CNS0095612	Silvery flower (tetraploid) 3	4.142
	CNS0095613	Golden flower (tetraploid) 1	3.112
	CNS0095614	Golden flower (tetraploid) 2	3.718
	CNS0095615	Golden flower (tetraploid) 3	4.614
CRA001975	CRR073297	Stem 1	5.230
	CRR073298	Stem 2	5.838
	CRR073299	Stem 3	4.423
	CRR073300	Leaf 1	5.221
	CRR073301	Leaf 2	6.245
	CRR073302	Leaf 3	3.502
	CRR073303	Juvenile bud 1	4.213
	CRR073304	Juvenile bud 2	2.339
	CRR073305	Juvenile bud 3	3.663
	CRR073306	Third green 1	0.734
	CRR073307	Third green 2	0.767
	CRR073308	Third green 3	0.611
	CRR073309	Second white 1	0.701
	CRR073310	Second white 2	1.246
	CRR073311	Second white 3	1.631
	CRR073312	Silver flowering 1	0.788
	CRR073313	Silver flowering 2	0.186
	CRR073314	Silver flowering 3	0.725
	CRR073315	Gold flowering 1	9.533
	CRR073316	Gold flowering 2	13.363
	CRR073317	Gold flowering 3	6.902
	CRR073318	Tawny withering 1	3.148
	CRR073319	Tawny withering 2	2.358
	CRR073320	Tawny withering 3	2.476