Gene detail

Detail information of GWHGAAZE027094

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06052.1	1.491E-140	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SYM2\|BBX22_ARATH	1E-94	B-box zinc finger protein 22 {ECO:0000303\|PubMed:19920209}
trEMBL	tr\|A0A068UCQ5\|A0A068UCQ5_COFCA	6E-141	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP06052.1}
TAIR10	AT1G78600.1	9E-74	light-regulated zinc finger protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14646042	14647927	+
GWHAAZE00000008	mRNA	14646042	14647927	+
GWHAAZE00000008	exon	14646042	14646218	+
GWHAAZE00000008	exon	14646777	14647202	+
GWHAAZE00000008	exon	14647640	14647927	+
GWHAAZE00000008	CDS	14646042	14646218	+
GWHAAZE00000008	CDS	14646777	14647202	+
GWHAAZE00000008	CDS	14647640	14647927	+

Transcript Sequence
>GWHTAAZE027128 ATTCAGTGCAACGTGTGCGAGGCGGCGGAGGCTACAGTGCTGTGCTGCGCAGACGAGGCGGCGCTGTGTTGGTCTTGCGATCAGAAGGTTCATGCTGCTAACAAGCTCGCTAGTAAACACCAGAGGGTTTCTCTTTCTAACTCTTCCTCTCAGATGCCCAAGTGTGACATCTGTCAGGAAACAGTTGGATATTTCTTCTGTTTGGAGGATCGAGCCTTACTCTGTAGGAAATGCGATGTTTCTATACACACAGCCAATACGTACGTCTCAGCTCACCAGAGGTTTCTTCTTACTGGAGTCAAAGTAGGGCTCGAACATACTGAACCTGCTGGTGCATCATCCTCCTCGGGGAAGTCACGGTCACATTCCAGTGAAAAAATCTCGGAACCAGAATCACAATCTTTCACTAGAAACATCATCCCAATGTCATCTTCTAATCAAATCAACAGAGTCTTACCTGTGCAAGGTAATGATTTTGCGGTGACCAAGTTGTCTTTTGCTGGGGGTACAACTGGAAATATTCAACAATGGCAGTTAGATGAACTTTTTGGACTTGCTGAACTTAATCAGAATTACGGGTATATGGATAATGCCTCATCAAAGGCTGACAGTGGAAAGATTGGAGACTCGGACTGCTCACCAATTTTACGATCAGTTGAGGTAGAGCTAGATGCAGAAGACTGCTTGGGTCAGGTACCTGATGCATCATGGGCAGTACCACAGATGCCTTCTCCGCCTACAGCCTCTGGACTTTACTGGCCAAAAACATATGAGCCATCAATGGAAAACGCAGCTTTTGTTCCAGACATAAGCTGTTCACGCATAAGCAACCAGTATCATTCTCAATCAAGTGGTGGGGGTAGCAACTTAAAGCGGCGGAGACAGTACTAA

Network for GWHGAAZE027094

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	51	91	2.80E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	104.158
	SRR3591706	second leaf	46.655
	SRR3591707	mature leaf	43.116
	SRR3591708	Shoot apex	92.536
	SRR3591709	Stem	152.503
	SRR3591710	White floral bud	72.401
	SRR3591711	White flower	71.372
	SRR3591712	Green floral bud	105.522
	SRR3591713	Yellow flower	29.341
SRP173429	SRR8316895	Juvenile bud stage	79.740
	SRR8316896	Juvenile bud stage	89.629
	SRR8316897	Juvenile bud stage	55.070
	SRR8316894	Third green stage	29.319
	SRR8316900	Third green stage	63.250
	SRR8316901	Third green stage	68.410
	SRR8316898	Complete white stage	5.128
	SRR8316899	Complete white stage	111.446
	SRR8316903	Complete white stage	10.732
	SRR8316902	Silver flowering stage	6.228
	SRR8316904	Silver flowering stage	6.794
	SRR8316905	Silver flowering stage	2.276
	SRR8316906	Gold flowering stage	8.553
	SRR8316907	Gold flowering stage	9.422
	SRR8316908	Gold flowering stage	11.595
SRP132670	SRR6706286	Control	94.100
	SRR6706287	Light intensity 50%	98.962
	SRR6706288	Light intensity 20%	114.128
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	77.696
	CNS0095593	Slightly white alabastrum(diploid) 2	90.199
	CNS0095594	Slightly white alabastrum(diploid) 3	79.568
	CNS0095595	Whole white alabastrum(diploid) 2	77.491
	CNS0095596	Whole white alabastrum(diploid) 3	37.972
	CNS0095597	Whole white alabastrum(diploid) 4	51.813
	CNS0095598	Silvery flower (diploied) 1	134.989
	CNS0095599	Silvery flower (diploied) 2	78.742
	CNS0095600	Silvery flower (diploied) 3	39.086
	CNS0095601	Golden flower (diploid) 1	83.273
	CNS0095602	Golden flower (diploid) 2	69.140
	CNS0095603	Golden flower (diploid) 3	60.210
	CNS0095604	Slightly white alabastrum(tetraploid) 1	66.629
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.274
	CNS0095606	Slightly white alabastrum(tetraploid) 3	130.527
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.655
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.963
	CNS0095610	Silvery flower (tetraploid) 1	24.885
	CNS0095611	Silvery flower (tetraploid) 2	48.051
	CNS0095612	Silvery flower (tetraploid) 3	13.155
	CNS0095613	Golden flower (tetraploid) 1	15.601
	CNS0095614	Golden flower (tetraploid) 2	29.580
	CNS0095615	Golden flower (tetraploid) 3	11.560
CRA001975	CRR073297	Stem 1	54.084
	CRR073298	Stem 2	51.165
	CRR073299	Stem 3	55.160
	CRR073300	Leaf 1	52.703
	CRR073301	Leaf 2	60.352
	CRR073302	Leaf 3	57.008
	CRR073303	Juvenile bud 1	45.277
	CRR073304	Juvenile bud 2	17.887
	CRR073305	Juvenile bud 3	72.539
	CRR073306	Third green 1	2.432
	CRR073307	Third green 2	3.057
	CRR073308	Third green 3	4.117
	CRR073309	Second white 1	6.588
	CRR073310	Second white 2	3.509
	CRR073311	Second white 3	3.274
	CRR073312	Silver flowering 1	1.551
	CRR073313	Silver flowering 2	3.958
	CRR073314	Silver flowering 3	1.216
	CRR073315	Gold flowering 1	22.197
	CRR073316	Gold flowering 2	22.313
	CRR073317	Gold flowering 3	32.001
	CRR073318	Tawny withering 1	56.635
	CRR073319	Tawny withering 2	53.951
	CRR073320	Tawny withering 3	59.246