Detail information of GWHGAAZE027110


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006360044.11.10208E-83PREDICTED: uncharacterized protein LOC102584680 [Solanum tuberosum]
Swissprottr|Q9ZVA0|LSH7_ARATH2E-76Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7
trEMBLtr|M1BX08|M1BX08_SOLTU4E-84Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400054899}
TAIR10AT1G78815.15E-61Protein of unknown function (DUF640)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1486650114866962+
GWHAAZE00000008mRNA1486650114866962+
GWHAAZE00000008exon1486650114866962+
GWHAAZE00000008CDS1486650114866962+
Transcript Sequence

Network for GWHGAAZE027110

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0092
CFinderModule0263


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04852.13DUF640271443.00E-63
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem5.103
SRR3591710White floral bud0.400
SRR3591711White flower0.263
SRR3591712Green floral bud0.058
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.219
SRR8316894Third green stage 0.000
SRR8316900Third green stage 1.850
SRR8316901Third green stage 0.604
SRR8316898Complete white stage 6.310
SRR8316899Complete white stage 29.885
SRR8316903Complete white stage 3.413
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.101
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control3.967
SRR6706287Light intensity 50%4.769
SRR6706288Light intensity 20%4.421
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.099
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 41.781
CNS0095598Silvery flower (diploied) 10.247
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.375
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.217
CNS0095603Golden flower (diploid) 30.308
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.238
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.310
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.056
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.149
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.499
CRR073301Leaf 20.370
CRR073302Leaf 31.299
CRR073303Juvenile bud 15.076
CRR073304Juvenile bud 22.195
CRR073305Juvenile bud 36.308
CRR073306Third green 10.250
CRR073307Third green 20.164
CRR073308Third green 30.192
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.808
CRR073319Tawny withering 20.000
CRR073320Tawny withering 34.680