Gene detail

Detail information of GWHGAAZE027114

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009607158.1	PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FZ49\|ALG9_ARATH	Dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
trEMBL	tr\|M1AX29\|M1AX29_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400032246}
TAIR10	AT1G16900.1	Alg9-like mannosyltransferase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14912541	14918738	+
GWHAAZE00000008	mRNA	14912541	14918738	+
GWHAAZE00000008	exon	14912541	14912827	+
GWHAAZE00000008	exon	14914014	14914101	+
GWHAAZE00000008	exon	14914218	14914377	+
GWHAAZE00000008	exon	14914558	14914775	+
GWHAAZE00000008	exon	14914922	14915217	+
GWHAAZE00000008	exon	14915637	14915751	+
GWHAAZE00000008	exon	14915839	14915977	+
GWHAAZE00000008	exon	14917226	14917422	+
GWHAAZE00000008	exon	14917548	14917637	+
GWHAAZE00000008	exon	14918342	14918738	+
GWHAAZE00000008	CDS	14912541	14912827	+
GWHAAZE00000008	CDS	14914014	14914101	+
GWHAAZE00000008	CDS	14914218	14914377	+
GWHAAZE00000008	CDS	14914558	14914775	+
GWHAAZE00000008	CDS	14914922	14915217	+
GWHAAZE00000008	CDS	14915637	14915751	+
GWHAAZE00000008	CDS	14915839	14915977	+
GWHAAZE00000008	CDS	14917226	14917422	+
GWHAAZE00000008	CDS	14917548	14917637	+
GWHAAZE00000008	CDS	14918342	14918473	+
GWHAAZE00000008	three_prime_UTR	14918474	14918738	+

Transcript Sequence
>GWHTAAZE027148 ATGTCTCTTACGGCGAGGCAGAGACGGCCACTAGACCTCGATCCTTCATCTTCATCGTCAACGGCGACGAAGTCATCGTACTCGAAGCTCGATAAACCGGAGAGATCCGACGGTAAAGGAGAGGCCGACAACGAGCTCGGTTGGTTGTTGCCGTTGATTGCCCTAGGGATGCTAAGGTATATGAGCGCTACGTCGAATATCATACATGATTGTGATGAGGTCTTCAATTACTGGGAGCCTCTTCACTTCCTCCTTTACAAATCTGGCTTTCAAACTTGGGAATACAGCTCTCAGTTTGCACTGCGTTCGTATTTGTACATACTTTTTCATAAGTTGGTAGGCGGGCCAGCTTCATGGTGGTTTGCTGAGGAGAAAGTGAGAGTATTTTATGCCGTGCGGATATTTCTTGGTTTCCTCTCTGTTACTACAGAGGCTGCTTTGGTGGTAGCCCTTTCCAGGAAGTATGGAAAGCGCCTTGCCTCTTATACGCTTGCCATGCTATGCTTAACAAGTGGTTGTTTCTTTGCTAGCACCAGTTTCTTGCCAAGCTCCTTCTCTATGTATGCTATTTCTCTCTCGTCAGCGTTATTTCTTTTTGAGAAACCTGCCATGGCAGTTACAGTTGCAGCCACCGGAGTTATTCTTGGTTGGCCATTCTCAATCTTGGTGTTTCTTCCTGTTACAATTTACTCTCTGATTAGAAGGTTCAAACAAGCGTTTCTCTCAGGGGCAGTCACTTCTCTTGCTCTTGTTGCATTCTCGATCTTTGTTGATTACAACTTCTACAAAAGATGGACGTCATCTGTCATCAATTTGATGTTGTATAATGTCTTAGGAGGTGGTGAGAGTCATTTGTATGGCACCGAAGGGCCATTGTATTACCTGAGGAATGGATTTAATAATTTCAACATTTCTTTTGTTCTTGCTTTGTTGTTCATTGGAATCCTGCCAATTACAAGAAAGAAGTATGCTCCAGACTTGTTGATTGTCATCTCACCGATATATATTTGGCTTGCATTCATGTCTTTGCAGCCACACAAGGAAGAAAGATTTCTCTATCCAATTTATCCACTTATATGTGTTGCTGCTTCAGCCGTCATTGAGAGCTTCCCTGATTTATTTCGTGATAAGTATAATCCCAATGATCAATCTCTGCTTGTTAAGTTGGCTAAATATCTCAGACCTTTGGTTCTTGGCCTCATTTTGTGTGCTTCCCATGCTCGGACATTTTCCCTACTTCATGGTTATTCTGCTCCTTTGGAGATCTACAAGCACTTCGAGTATCATGATGACGCAGGAACAGGTTCTGTGGTTTGTGTTGGAAGTGAGTGGCACCGCTTCCCATCGTCCTTTTTCGTCCCTGATTACGTGGGTCAAGTTAGGTGGATAGATGATGGGTTTAGGGGTCTACTACCATTCCCATTTAATTCTACCTTGGGTGGAACTTCAGCTGCACCACCTTATTTTAACAATAAGAATAAGGCATCAGATGAGCAATACCTGCGGGATCTTGAAAGCTGTGACTTCCTCATTGAGTTGGAGCTTAAACGACCTTACCCCTCTCGAGGAAGTGACTTGTCAACATGGGAGGTTGTTGCAGCATTACCATATTTGGACAGGGAACTTTCGCCTCCCCTCTACCGGTCGTTCTTCATTCCTAACCAGTGGCAGCAGAAGAATGTTTTCGGCATGTACAAACTCCTTAAAAGAATACGAAACTGATAGCGGATGGACCTTTGTTATGCCGTTAGTTGTACCATTTTTGAACCTGAGGTATGTAGCAACCAATAACGTAATGTAAGATCACTAACTTTAAGCACCAAAACTCAGCTTTACATGGTGAATAACTAAATTGTATATGTTGATTGCATTGAGCGCTCTAACTAAAACATTACGTTGCCTATCTTATCGAGCATCTTGATATATAAACTACACCGTCTGTCTTGATCTCAACGTAATTCCTGTTCAAGAATACACTTTATTTTGT

Network for GWHGAAZE027114

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03901.18	Glyco_transf_22	53	454	4.00E-102

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03846	ALG9	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.205
	SRR3591706	second leaf	9.629
	SRR3591707	mature leaf	6.075
	SRR3591708	Shoot apex	24.952
	SRR3591709	Stem	21.223
	SRR3591710	White floral bud	17.121
	SRR3591711	White flower	15.357
	SRR3591712	Green floral bud	18.138
	SRR3591713	Yellow flower	7.167
SRP173429	SRR8316895	Juvenile bud stage	12.002
	SRR8316896	Juvenile bud stage	19.604
	SRR8316897	Juvenile bud stage	10.752
	SRR8316894	Third green stage	7.877
	SRR8316900	Third green stage	19.943
	SRR8316901	Third green stage	20.423
	SRR8316898	Complete white stage	7.620
	SRR8316899	Complete white stage	19.735
	SRR8316903	Complete white stage	11.778
	SRR8316902	Silver flowering stage	7.778
	SRR8316904	Silver flowering stage	11.262
	SRR8316905	Silver flowering stage	3.902
	SRR8316906	Gold flowering stage	14.290
	SRR8316907	Gold flowering stage	14.870
	SRR8316908	Gold flowering stage	11.790
SRP132670	SRR6706286	Control	11.778
	SRR6706287	Light intensity 50%	11.737
	SRR6706288	Light intensity 20%	12.864
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.957
	CNS0095593	Slightly white alabastrum(diploid) 2	22.632
	CNS0095594	Slightly white alabastrum(diploid) 3	20.981
	CNS0095595	Whole white alabastrum(diploid) 2	19.321
	CNS0095596	Whole white alabastrum(diploid) 3	23.170
	CNS0095597	Whole white alabastrum(diploid) 4	16.817
	CNS0095598	Silvery flower (diploied) 1	16.110
	CNS0095599	Silvery flower (diploied) 2	14.688
	CNS0095600	Silvery flower (diploied) 3	19.052
	CNS0095601	Golden flower (diploid) 1	12.423
	CNS0095602	Golden flower (diploid) 2	14.949
	CNS0095603	Golden flower (diploid) 3	13.793
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.356
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.875
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.164
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.142
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.264
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.402
	CNS0095610	Silvery flower (tetraploid) 1	19.235
	CNS0095611	Silvery flower (tetraploid) 2	19.833
	CNS0095612	Silvery flower (tetraploid) 3	12.218
	CNS0095613	Golden flower (tetraploid) 1	8.381
	CNS0095614	Golden flower (tetraploid) 2	13.552
	CNS0095615	Golden flower (tetraploid) 3	6.237
CRA001975	CRR073297	Stem 1	13.779
	CRR073298	Stem 2	10.824
	CRR073299	Stem 3	15.008
	CRR073300	Leaf 1	13.741
	CRR073301	Leaf 2	13.388
	CRR073302	Leaf 3	11.152
	CRR073303	Juvenile bud 1	15.996
	CRR073304	Juvenile bud 2	8.671
	CRR073305	Juvenile bud 3	13.884
	CRR073306	Third green 1	3.031
	CRR073307	Third green 2	3.361
	CRR073308	Third green 3	3.945
	CRR073309	Second white 1	3.498
	CRR073310	Second white 2	5.005
	CRR073311	Second white 3	5.331
	CRR073312	Silver flowering 1	2.526
	CRR073313	Silver flowering 2	2.673
	CRR073314	Silver flowering 3	3.661
	CRR073315	Gold flowering 1	6.768
	CRR073316	Gold flowering 2	7.297
	CRR073317	Gold flowering 3	4.823
	CRR073318	Tawny withering 1	14.409
	CRR073319	Tawny withering 2	10.022
	CRR073320	Tawny withering 3	14.337