Detail information of GWHGAAZE027134


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP05973.10unnamed protein product [Coffea canephora]
COGYP_003559253.17E-171homogentisate 1,2-dioxygenase
Swissprottr|Q9ZRA2|HGD_ARATH0Homogentisate 1,2-dioxygenase
trEMBLtr|A0A068UEB1|A0A068UEB1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313|EMBL:CDP05973.1}
TAIR10AT5G54080.20homogentisate 1,2-dioxygenase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1526784115271794-
GWHAAZE00000008mRNA1526784115271794-
GWHAAZE00000008exon1526784115268068-
GWHAAZE00000008exon1526838315268466-
GWHAAZE00000008exon1526911515269269-
GWHAAZE00000008exon1526940215269471-
GWHAAZE00000008exon1526956915269744-
GWHAAZE00000008exon1526983615270003-
GWHAAZE00000008exon1527013715270216-
GWHAAZE00000008exon1527088915271119-
GWHAAZE00000008exon1527158015271794-
GWHAAZE00000008CDS1527158015271794-
GWHAAZE00000008CDS1527088915271119-
GWHAAZE00000008CDS1527013715270216-
GWHAAZE00000008CDS1526983615270003-
GWHAAZE00000008CDS1526956915269744-
GWHAAZE00000008CDS1526940215269471-
GWHAAZE00000008CDS1526911515269269-
GWHAAZE00000008CDS1526838315268466-
GWHAAZE00000008CDS1526784115268068-
Transcript Sequence

Network for GWHGAAZE027134

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04209.14HgmA214487.20E-216
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00451HGD, hmgA Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Tyrosine metabolismmap00350
Styrene degradationmap00643

Gene Ontology

GO term OntologyName
GO:0006559biological_processL-phenylalanine catabolic process
GO:0006570biological_processtyrosine metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0004411molecular_functionhomogentisate 1,2-dioxygenase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf54.973
SRR3591706second leaf14.704
SRR3591707mature leaf28.433
SRR3591708Shoot apex24.621
SRR3591709Stem61.724
SRR3591710White floral bud78.664
SRR3591711White flower93.303
SRR3591712Green floral bud43.927
SRR3591713Yellow flower258.832
SRP173429 SRR8316895Juvenile bud stage 10.013
SRR8316896Juvenile bud stage 18.576
SRR8316897Juvenile bud stage 9.050
SRR8316894Third green stage 8.515
SRR8316900Third green stage 27.431
SRR8316901Third green stage 27.930
SRR8316898Complete white stage 29.725
SRR8316899Complete white stage 45.693
SRR8316903Complete white stage 48.542
SRR8316902Silver flowering stage32.912
SRR8316904Silver flowering stage42.519
SRR8316905Silver flowering stage20.274
SRR8316906Gold flowering stage 112.918
SRR8316907Gold flowering stage 105.187
SRR8316908Gold flowering stage 107.462
SRP132670SRR6706286Control37.942
SRR6706287Light intensity 50%36.392
SRR6706288Light intensity 20%35.589
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.743
CNS0095593Slightly white alabastrum(diploid) 214.434
CNS0095594Slightly white alabastrum(diploid) 316.150
CNS0095595Whole white alabastrum(diploid) 216.659
CNS0095596Whole white alabastrum(diploid) 313.820
CNS0095597Whole white alabastrum(diploid) 420.090
CNS0095598Silvery flower (diploied) 141.230
CNS0095599Silvery flower (diploied) 241.786
CNS0095600Silvery flower (diploied) 3113.393
CNS0095601Golden flower (diploid) 185.656
CNS0095602Golden flower (diploid) 2214.325
CNS0095603Golden flower (diploid) 3201.166
CNS0095604Slightly white alabastrum(tetraploid) 125.833
CNS0095605Slightly white alabastrum(tetraploid) 220.357
CNS0095606Slightly white alabastrum(tetraploid) 336.345
CNS0095607Whole white alabastrum(tetraploid) 121.496
CNS0095608Whole white alabastrum(tetraploid) 218.793
CNS0095609Whole white alabastrum(tetraploid) 327.349
CNS0095610Silvery flower (tetraploid) 186.416
CNS0095611Silvery flower (tetraploid) 2100.490
CNS0095612Silvery flower (tetraploid) 368.540
CNS0095613Golden flower (tetraploid) 1144.665
CNS0095614Golden flower (tetraploid) 2140.479
CNS0095615Golden flower (tetraploid) 3320.215
CRA001975CRR073297Stem 128.262
CRR073298Stem 222.012
CRR073299Stem 319.669
CRR073300Leaf 140.162
CRR073301Leaf 233.512
CRR073302Leaf 328.547
CRR073303Juvenile bud 137.304
CRR073304Juvenile bud 237.576
CRR073305Juvenile bud 344.749
CRR073306Third green 135.453
CRR073307Third green 232.388
CRR073308Third green 332.719
CRR073309Second white 158.634
CRR073310Second white 248.822
CRR073311Second white 340.386
CRR073312Silver flowering 171.995
CRR073313Silver flowering 272.204
CRR073314Silver flowering 384.148
CRR073315Gold flowering 116.479
CRR073316Gold flowering 226.459
CRR073317Gold flowering 314.786
CRR073318Tawny withering 134.307
CRR073319Tawny withering 224.584
CRR073320Tawny withering 319.778