Gene detail

Detail information of GWHGAAZE027138

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644169.1	3.3684E-110	PREDICTED: E3 SUMO-protein ligase MMS21 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8GYH7\|NSE2_ARATH	5E-88	E3 SUMO-protein ligase MMS21
trEMBL	tr\|A0A061F8U4\|A0A061F8U4_THECC	9E-102	RING/U-box superfamily protein, putative isoform 1 {ECO:0000313\|EMBL:EOY13117.1}
TAIR10	AT3G15150.1	2E-66	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15301237	15304413	+
GWHAAZE00000008	mRNA	15301237	15304413	+
GWHAAZE00000008	exon	15301237	15301332	+
GWHAAZE00000008	exon	15301435	15301506	+
GWHAAZE00000008	exon	15302351	15302461	+
GWHAAZE00000008	exon	15302613	15302723	+
GWHAAZE00000008	exon	15303234	15303373	+
GWHAAZE00000008	exon	15303860	15303945	+
GWHAAZE00000008	exon	15304379	15304413	+
GWHAAZE00000008	CDS	15301237	15301332	+
GWHAAZE00000008	CDS	15301435	15301506	+
GWHAAZE00000008	CDS	15302351	15302461	+
GWHAAZE00000008	CDS	15302613	15302723	+
GWHAAZE00000008	CDS	15303234	15303373	+
GWHAAZE00000008	CDS	15303860	15303945	+
GWHAAZE00000008	CDS	15304379	15304413	+

Transcript Sequence
>GWHTAAZE027172 ATGGCGTCCACGTCCGCCCCTCGAAGCAATGCCGCCACCGGACGAATTAAATCCGCCGCTTCCACTCTTTACTCTGAAAATCAATCTGCGGTTGCAGAAATCCGAAAAGCCCTTACTATGATGAAGGAAATTGCGGTTGACCTGGAGAGAGATAATCAATCTCAAATGGTATCAGAGCTTGAAGCAGCGATTATTGAGTTGTTAGAAGCTTCTGAAGATTGTATGCATCTTTCCTCTGCGGTTCAATCTATAGGAAATGTGTACCAGCTTGGAGAAGAGCTAACAGATTTTAAGAAGTTGTTTGATGGTGAGATTGCAAAATCAAAGGCTAGTTCGTCTTCTGTTCCGCAAAATCATCCGTTATTGCGCCAGTTTAGGGAAGCTATCTGGAATGTTCATCATTCTGGACAGCCAATGCCAGGTGAAGAGCAGGAGGATATTGTAATGACTAGTACCCAATGCAACATTCTGAATATTACTTGCCCATTAAGTGGAAAGCCTATTTCTGAACTCGCGGAGCCAGTTCGCAGCATGGACTGCAAGCATATATATGAGAAAAAGGTTATCACACAATACATAAGGTCTAAGCATGGCCGTGCCCAATGTCCTATGGCAGTACTTAGAAAGTGGCAGAGATGGACAGTGATTTAA

Network for GWHGAAZE027138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11789.9	zf-Nse	145	204	2.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.838
	SRR3591706	second leaf	1.580
	SRR3591707	mature leaf	2.476
	SRR3591708	Shoot apex	10.366
	SRR3591709	Stem	5.266
	SRR3591710	White floral bud	4.339
	SRR3591711	White flower	4.177
	SRR3591712	Green floral bud	5.969
	SRR3591713	Yellow flower	3.608
SRP173429	SRR8316895	Juvenile bud stage	4.879
	SRR8316896	Juvenile bud stage	6.878
	SRR8316897	Juvenile bud stage	2.752
	SRR8316894	Third green stage	2.210
	SRR8316900	Third green stage	5.975
	SRR8316901	Third green stage	5.822
	SRR8316898	Complete white stage	1.034
	SRR8316899	Complete white stage	7.818
	SRR8316903	Complete white stage	2.274
	SRR8316902	Silver flowering stage	1.269
	SRR8316904	Silver flowering stage	1.830
	SRR8316905	Silver flowering stage	0.542
	SRR8316906	Gold flowering stage	1.077
	SRR8316907	Gold flowering stage	3.200
	SRR8316908	Gold flowering stage	1.277
SRP132670	SRR6706286	Control	2.629
	SRR6706287	Light intensity 50%	3.643
	SRR6706288	Light intensity 20%	3.594
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.819
	CNS0095593	Slightly white alabastrum(diploid) 2	4.926
	CNS0095594	Slightly white alabastrum(diploid) 3	6.777
	CNS0095595	Whole white alabastrum(diploid) 2	5.716
	CNS0095596	Whole white alabastrum(diploid) 3	6.240
	CNS0095597	Whole white alabastrum(diploid) 4	6.977
	CNS0095598	Silvery flower (diploied) 1	4.494
	CNS0095599	Silvery flower (diploied) 2	3.452
	CNS0095600	Silvery flower (diploied) 3	5.284
	CNS0095601	Golden flower (diploid) 1	3.187
	CNS0095602	Golden flower (diploid) 2	4.192
	CNS0095603	Golden flower (diploid) 3	5.092
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.027
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.478
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.672
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.707
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.669
	CNS0095610	Silvery flower (tetraploid) 1	5.526
	CNS0095611	Silvery flower (tetraploid) 2	6.657
	CNS0095612	Silvery flower (tetraploid) 3	1.658
	CNS0095613	Golden flower (tetraploid) 1	2.506
	CNS0095614	Golden flower (tetraploid) 2	5.446
	CNS0095615	Golden flower (tetraploid) 3	2.505
CRA001975	CRR073297	Stem 1	7.060
	CRR073298	Stem 2	5.842
	CRR073299	Stem 3	5.333
	CRR073300	Leaf 1	7.359
	CRR073301	Leaf 2	5.322
	CRR073302	Leaf 3	8.027
	CRR073303	Juvenile bud 1	7.245
	CRR073304	Juvenile bud 2	3.042
	CRR073305	Juvenile bud 3	2.629
	CRR073306	Third green 1	0.064
	CRR073307	Third green 2	0.591
	CRR073308	Third green 3	0.490
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.112
	CRR073313	Silver flowering 2	0.656
	CRR073314	Silver flowering 3	0.427
	CRR073315	Gold flowering 1	1.289
	CRR073316	Gold flowering 2	3.727
	CRR073317	Gold flowering 3	3.618
	CRR073318	Tawny withering 1	4.970
	CRR073319	Tawny withering 2	5.275
	CRR073320	Tawny withering 3	5.047