Gene detail

Detail information of GWHGAAZE027139

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282697.1	1.0705E-172	PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Vitis vinifera]
COG	YP_432130.1	3E-11	inhibitor of the KinA pathway to sporulation, exonuclease
Swissprot	tr\|Q8W566\|Y3514_ARATH	1E-142	Uncharacterized exonuclease domain-containing protein At3g15140
trEMBL	tr\|E0CSF1\|E0CSF1_VITVI	2E-162	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20250.3}
TAIR10	AT3G15140.1	1E-114	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15320801	15323260	+
GWHAAZE00000008	mRNA	15320801	15323260	+
GWHAAZE00000008	exon	15320801	15321001	+
GWHAAZE00000008	exon	15321446	15321648	+
GWHAAZE00000008	exon	15321983	15322063	+
GWHAAZE00000008	exon	15322449	15322574	+
GWHAAZE00000008	exon	15322846	15322969	+
GWHAAZE00000008	exon	15323060	15323260	+
GWHAAZE00000008	CDS	15320801	15321001	+
GWHAAZE00000008	CDS	15321446	15321648	+
GWHAAZE00000008	CDS	15321983	15322063	+
GWHAAZE00000008	CDS	15322449	15322574	+
GWHAAZE00000008	CDS	15322846	15322969	+
GWHAAZE00000008	CDS	15323060	15323260	+

Transcript Sequence
>GWHTAAZE027173 ATGGCGTTTTGGCGGGTTTCTTCTGTATTCCGCCAGATTTCAATGGTTCCTTTTTCCGCAATAATATCCCGTCCGGTAATTCGGAGTTTTCGAGTATCTGCTTCTCTCTCTACCGAAGAGACAACAACTCCACCTTCGGTAAAGAGGAGCGGTCGTTGGAAACCCATGTGTTTGTACTACACTCAAGGTAAGTGCACAAAGATGGATGATCCCGCCCACCTAGATGCATTCAACCATAATTGTTATGTTGAGGTTAAACGAAATGCTGTTGAGTTCGAACATAAGCGGTCGCAGCAGCTAGATTTTTTCCTTGTGCTTGATTTGGAAGGCAAAGTTGAGATACTCGAATTTCCTGTTCTGATGGTTGATGCAAAAACAATGGATGTAGTGGATTTCTTCCACAGGTTTGTAAGGCCTTCAGAAATGAGTGAGCAAAGAATAAATGAATACATTGAAGGAAAATATGGGAAAATAGGAGTTGACCGTGTTTGGCATGATACTGCAATTCCATTCAATGAAGTTATTCAACAATTTGAAGATTGGATGGCTCAGCATCACTTGTGGGAAAAGGATCTCAATGGGCGTCTTAATAAAGCTGCATTTGTAACTTGTGGGAATTGGGATTTGAAAACAAAAGTTCCCCAGCAATGTCAAGTTGCAAGGATGAAGCTTCCCCCCTACTTTATGGAATGGATCAATTTGAAGGATGCCTATCTCAACTTTTACAAAAGGAGGGCCACAGGAATGGTGACAATGATGAGGGAACTTGAGATACCATTGGTAGGAAGCCACCATCTCGGGATCGATGACACAAAGAACATAACAAGGGTACTGCAACACATGCTTATTGATGGTGCACTTCTGCAGATTACTGCAAGGAGAGATCCCAAGTCTCCCGCAAATGTTGAATTTCTCTTAAAGGATCGTATAAGGTAG

Network for GWHGAAZE027139

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0294

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00929.25	RNase_T	107	277	5.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.146
	SRR3591706	second leaf	11.393
	SRR3591707	mature leaf	8.584
	SRR3591708	Shoot apex	18.944
	SRR3591709	Stem	8.015
	SRR3591710	White floral bud	7.817
	SRR3591711	White flower	16.495
	SRR3591712	Green floral bud	13.982
	SRR3591713	Yellow flower	12.160
SRP173429	SRR8316895	Juvenile bud stage	10.373
	SRR8316896	Juvenile bud stage	13.662
	SRR8316897	Juvenile bud stage	5.806
	SRR8316894	Third green stage	5.109
	SRR8316900	Third green stage	18.412
	SRR8316901	Third green stage	18.259
	SRR8316898	Complete white stage	7.570
	SRR8316899	Complete white stage	25.722
	SRR8316903	Complete white stage	9.503
	SRR8316902	Silver flowering stage	6.050
	SRR8316904	Silver flowering stage	5.512
	SRR8316905	Silver flowering stage	3.220
	SRR8316906	Gold flowering stage	12.409
	SRR8316907	Gold flowering stage	9.902
	SRR8316908	Gold flowering stage	8.843
SRP132670	SRR6706286	Control	8.713
	SRR6706287	Light intensity 50%	10.061
	SRR6706288	Light intensity 20%	10.872
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.700
	CNS0095593	Slightly white alabastrum(diploid) 2	7.494
	CNS0095594	Slightly white alabastrum(diploid) 3	6.516
	CNS0095595	Whole white alabastrum(diploid) 2	8.562
	CNS0095596	Whole white alabastrum(diploid) 3	7.817
	CNS0095597	Whole white alabastrum(diploid) 4	7.854
	CNS0095598	Silvery flower (diploied) 1	13.611
	CNS0095599	Silvery flower (diploied) 2	9.989
	CNS0095600	Silvery flower (diploied) 3	10.466
	CNS0095601	Golden flower (diploid) 1	7.769
	CNS0095602	Golden flower (diploid) 2	8.625
	CNS0095603	Golden flower (diploid) 3	8.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.651
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.632
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.843
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.778
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.471
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.075
	CNS0095610	Silvery flower (tetraploid) 1	10.792
	CNS0095611	Silvery flower (tetraploid) 2	14.875
	CNS0095612	Silvery flower (tetraploid) 3	5.838
	CNS0095613	Golden flower (tetraploid) 1	5.610
	CNS0095614	Golden flower (tetraploid) 2	9.049
	CNS0095615	Golden flower (tetraploid) 3	3.706
CRA001975	CRR073297	Stem 1	9.552
	CRR073298	Stem 2	8.608
	CRR073299	Stem 3	9.311
	CRR073300	Leaf 1	13.060
	CRR073301	Leaf 2	9.723
	CRR073302	Leaf 3	10.320
	CRR073303	Juvenile bud 1	10.283
	CRR073304	Juvenile bud 2	8.183
	CRR073305	Juvenile bud 3	5.565
	CRR073306	Third green 1	0.849
	CRR073307	Third green 2	0.467
	CRR073308	Third green 3	0.736
	CRR073309	Second white 1	0.867
	CRR073310	Second white 2	0.385
	CRR073311	Second white 3	2.056
	CRR073312	Silver flowering 1	0.700
	CRR073313	Silver flowering 2	0.939
	CRR073314	Silver flowering 3	0.323
	CRR073315	Gold flowering 1	11.964
	CRR073316	Gold flowering 2	10.775
	CRR073317	Gold flowering 3	5.175
	CRR073318	Tawny withering 1	7.429
	CRR073319	Tawny withering 2	6.404
	CRR073320	Tawny withering 3	5.359