Gene detail

Detail information of GWHGAAZE027157

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009759962.1	0	PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 [Nicotiana sylvestris]
COG	YP_003268638.1	3E-64	methylthioribulose-1-phosphate dehydratase
Swissprot	tr\|E0CSI1\|MTBC1_VITVI	0	Enolase-phosphatase E1 {ECO:0000255\|HAMAP-Rule:MF_03118}
trEMBL	tr\|A0A068UBJ2\|A0A068UBJ2_COFCA	0	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 {ECO:0000256\|HAMAP-Rule:MF_03118}
TAIR10	AT5G53850.2	0	haloacid dehalogenase-like hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15527219	15535255	+
GWHAAZE00000008	mRNA	15527219	15535255	+
GWHAAZE00000008	exon	15527219	15527396	+
GWHAAZE00000008	exon	15527760	15527896	+
GWHAAZE00000008	exon	15529593	15529688	+
GWHAAZE00000008	exon	15530577	15530696	+
GWHAAZE00000008	exon	15531282	15531371	+
GWHAAZE00000008	exon	15531577	15531759	+
GWHAAZE00000008	exon	15531848	15532003	+
GWHAAZE00000008	exon	15533709	15533858	+
GWHAAZE00000008	exon	15533944	15534045	+
GWHAAZE00000008	exon	15534537	15534646	+
GWHAAZE00000008	exon	15534729	15534847	+
GWHAAZE00000008	exon	15535030	15535255	+
GWHAAZE00000008	CDS	15527219	15527396	+
GWHAAZE00000008	CDS	15527760	15527896	+
GWHAAZE00000008	CDS	15529593	15529688	+
GWHAAZE00000008	CDS	15530577	15530696	+
GWHAAZE00000008	CDS	15531282	15531371	+
GWHAAZE00000008	CDS	15531577	15531759	+
GWHAAZE00000008	CDS	15531848	15532003	+
GWHAAZE00000008	CDS	15533709	15533858	+
GWHAAZE00000008	CDS	15533944	15534045	+
GWHAAZE00000008	CDS	15534537	15534646	+
GWHAAZE00000008	CDS	15534729	15534847	+
GWHAAZE00000008	CDS	15535030	15535121	+
GWHAAZE00000008	three_prime_UTR	15535122	15535255	+

Transcript Sequence
>GWHTAAZE027191 ATGGCTGTAGCTTCAACAGCAGCCCTAGCCGTGAACGGAGTGAAAATGGCGACGACTTCACAGGCTTATTTGGAAAGTAATCGAGTGAAGGAAACGAAGGACTTGATATCCGAGCTCTGTCGTCAATTCTACCAACTTGGATGGGTCTCCGGCACCTGGTGGAAGCATCACTATCAAGGCGTGCAGAAGGAAAGGATGGTTCCAGATGACATGTATGTGCTCTCTCCAAGTGGCTCTTACTTGTTTACGCCTGTGCCGAAGACTTATCCTCATAAGCCTCCGAAATGTTCAGATTGTGCTCCTCTGTTCTTGAAGGCATATGATATGCGTAATGCAGGTGCTGTCATCCATAGTCATGGAATGGAATCTTGTCTTGTAACAATGCTTAATCCATTATCAAAAGAGTTCCGGATTACTCATATGGAAATGATAAAAGGAATTCAGGGGCATGGTTATTATGATGAGCTTGTGGTTCCCATAATAGAGAACACGGCCCATGAGAGGGAGCTTACAGAATTGCTTGCTAACGCTATTGAAGCTTACCCAAAAGCAACAGCAGTGCTGGTTCGTAACCATGGTATTTACATATGGGGTGATTCATGGATAAGTGCTAAAACTCAGGCTGAATGTTATCACTATCTCTTTGATGCTGCCATTAAGCTTCATCAATTGGGTCTGGACTGTTCTACACCAAGTCATGGTCCCATCCGTAGCTTCAAAGGCAGTTTAGGTGGTGATCCTAATTTACACGTGTATCCAAAAGCAGGGAATGTTATTTCAAATAATGAGATTGAGCCACCACGACGTTGCATTGTTCTGGACATCGAAGGAACCACTACTCCTATATCATTCGTTACCGATGTTCTTTTCCCATATGCCTGCAACAATGTGGGAAAGCATTTAGATGCAACATATGACACTGCAGAAACTCAAAATGATATTAAATTATTGCGCTCTCAAGTGGAGGGTGATTTAGAACAAGGAATAGTTGGTGCCGTTCCCATTCCCCCTGATGGTGCAGGGAAAGAGGATGTGATTGCAGCCTTGGTTGCTAACGTGGATGCAATGATTAAAGCTGACAGGAAGATTACTTCCCTAAAACAATTACAAGGTCATATATGGCAAACTGGGTTTCAGAATAATGAATTAGAAGGGGTAGTTTTTGATGATGTACCCGAAGCCCTTGAGAAGTGGCATGCGTTGGGAATCAAGGTGTACATATATTCTAGTGGCAGCAGGTTGGCGCAAAGGCTATTATTTGGCTACACAAATTATGGGGACTTGAGAAAATACTTGAGTGGATTTTTTGATACCACCGTGGGGAACAAGAAAGAATCTAGGAGTTACATTGAAATTACAGAGTCCTTGGGAGTAGATAAGCCGTCAGATATTTTATTTGTGACTGATGTTCTCCAAGAAGCTGTAGCTGCCAAGGCAGCAGGTTTGGAGGCTATTATATCTGTCCGGCCAGGAAATGCACCTCTTCTGGAGAATCATGGATTTAATACAGTTACTTCGTTTTCAGAAATCTAAGATTGGTGTGTATTTCTCTATGTAACCTTATTGAAATGTGACATAGTTGTAGCAATAAATGAAGAATAAACAGCTTTTTGAACAGATTACTCGGAAATGATTTTTAGTTCTGTTTCTGCATTTTTTTTTTTTGG

Network for GWHGAAZE027157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00596.22	Aldolase_II	37	218	4.20E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16054	DEP1	Metabolic pathways	map01100
K16054	DEP1	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0019509	biological_process	L-methionine salvage from methylthioadenosine
GO:0005737	cellular_component	cytoplasm
GO:0000287	molecular_function	magnesium ion binding
GO:0043874	molecular_function	acireductone synthase activity
GO:0046872	molecular_function	metal ion binding
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	111.056
	SRR3591706	second leaf	106.566
	SRR3591707	mature leaf	152.432
	SRR3591708	Shoot apex	87.991
	SRR3591709	Stem	148.692
	SRR3591710	White floral bud	68.987
	SRR3591711	White flower	153.886
	SRR3591712	Green floral bud	52.443
	SRR3591713	Yellow flower	170.240
SRP173429	SRR8316895	Juvenile bud stage	54.048
	SRR8316896	Juvenile bud stage	72.260
	SRR8316897	Juvenile bud stage	38.374
	SRR8316894	Third green stage	30.249
	SRR8316900	Third green stage	59.864
	SRR8316901	Third green stage	64.920
	SRR8316898	Complete white stage	27.770
	SRR8316899	Complete white stage	85.599
	SRR8316903	Complete white stage	45.543
	SRR8316902	Silver flowering stage	73.341
	SRR8316904	Silver flowering stage	88.695
	SRR8316905	Silver flowering stage	50.131
	SRR8316906	Gold flowering stage	137.025
	SRR8316907	Gold flowering stage	99.405
	SRR8316908	Gold flowering stage	127.865
SRP132670	SRR6706286	Control	57.437
	SRR6706287	Light intensity 50%	57.285
	SRR6706288	Light intensity 20%	59.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	75.752
	CNS0095593	Slightly white alabastrum(diploid) 2	68.002
	CNS0095594	Slightly white alabastrum(diploid) 3	72.959
	CNS0095595	Whole white alabastrum(diploid) 2	56.549
	CNS0095596	Whole white alabastrum(diploid) 3	48.526
	CNS0095597	Whole white alabastrum(diploid) 4	49.836
	CNS0095598	Silvery flower (diploied) 1	93.853
	CNS0095599	Silvery flower (diploied) 2	94.631
	CNS0095600	Silvery flower (diploied) 3	85.033
	CNS0095601	Golden flower (diploid) 1	95.591
	CNS0095602	Golden flower (diploid) 2	100.575
	CNS0095603	Golden flower (diploid) 3	97.820
	CNS0095604	Slightly white alabastrum(tetraploid) 1	63.004
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.132
	CNS0095606	Slightly white alabastrum(tetraploid) 3	97.750
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.511
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.176
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.316
	CNS0095610	Silvery flower (tetraploid) 1	136.874
	CNS0095611	Silvery flower (tetraploid) 2	109.469
	CNS0095612	Silvery flower (tetraploid) 3	59.324
	CNS0095613	Golden flower (tetraploid) 1	84.950
	CNS0095614	Golden flower (tetraploid) 2	121.238
	CNS0095615	Golden flower (tetraploid) 3	45.804
CRA001975	CRR073297	Stem 1	41.838
	CRR073298	Stem 2	34.996
	CRR073299	Stem 3	30.884
	CRR073300	Leaf 1	40.630
	CRR073301	Leaf 2	32.435
	CRR073302	Leaf 3	29.116
	CRR073303	Juvenile bud 1	31.017
	CRR073304	Juvenile bud 2	18.544
	CRR073305	Juvenile bud 3	32.591
	CRR073306	Third green 1	21.400
	CRR073307	Third green 2	23.902
	CRR073308	Third green 3	22.209
	CRR073309	Second white 1	26.045
	CRR073310	Second white 2	29.416
	CRR073311	Second white 3	21.623
	CRR073312	Silver flowering 1	26.170
	CRR073313	Silver flowering 2	28.041
	CRR073314	Silver flowering 3	25.830
	CRR073315	Gold flowering 1	49.001
	CRR073316	Gold flowering 2	74.236
	CRR073317	Gold flowering 3	36.758
	CRR073318	Tawny withering 1	57.965
	CRR073319	Tawny withering 2	66.489
	CRR073320	Tawny withering 3	57.831