Gene detail

Detail information of GWHGAAZE027183

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644219.1	1.1064E-117	PREDICTED: beta-glucosidase 18 isoform X1 [Vitis vinifera]
COG	YP_004449345.1	1E-53	beta-galactosidase
Swissprot	tr\|Q7XSK0\|BGL18_ORYSJ	5E-88	Beta-glucosidase 18 (Precursor)
trEMBL	tr\|F6H271\|F6H271_VITVI	3E-118	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46367.1}
TAIR10	AT1G61820.1	7E-57	beta glucosidase 46

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15854110	15856374	-
GWHAAZE00000008	mRNA	15854110	15856374	-
GWHAAZE00000008	exon	15856253	15856374	-
GWHAAZE00000008	exon	15855244	15855499	-
GWHAAZE00000008	exon	15854986	15855088	-
GWHAAZE00000008	exon	15854497	15854605	-
GWHAAZE00000008	exon	15854110	15854350	-
GWHAAZE00000008	CDS	15856253	15856374	-
GWHAAZE00000008	CDS	15855244	15855499	-
GWHAAZE00000008	CDS	15854986	15855088	-
GWHAAZE00000008	CDS	15854497	15854605	-
GWHAAZE00000008	CDS	15854110	15854350	-

Transcript Sequence
>GWHTAAZE027217 ATGCAGGCAGAACAAGGTGGATGGATGGGGATAACGGTGAGCTCGTACATGTACGAGCCAATGAGAAATGATGTTAATGACGAGGAAGCTTCGGGCAGGGCCTTGGCTTTTAACATGTGCTGGAATTTGGATCCCCTAATATTAGGTGATTACCCTCCAGAAATGCGTCATTATCATGGGGACGAACTACCTAGATTCACCTCAGAGGAAAAAATGTACCTAAAAGGCAGTATCGACTTTATCGGAGTTAACCATTATTCTACTCTCTACGCCAAAGATTGTTTCCATTCTAATACTTGCACTCAGAGCGAAGATCGCGCAATCCGAGGTTTTGTTAGCACTCCTGGTGAGAGAGATGGTGTACCAATTGGACAACCGACGGGGATGAAAAGTTTTTATGTAGTGCCAAGAGGGATGGAGGAGAACATTGACTACTTTGTGAAACGATACGGTAACATTCCCATGTTTATAACTGAAAATGGTTATGCCACGGTTCATAAAGAAAATGAGCAAGTGGAGGACTTGCTGCATGATAACAAAAGAATTGAGTTTCATAAAGCATACCTCTCTTCTTTGGCTACAGCTATCAGGAATGGTGCTGATGTACGTGGCTACTTCATATGGTCGTTAATGGATAATTTTGAATGGGCACAAGGTTATGGAACGAGATTTGGGTTATACTATATCGATCACCCAACACTAAACCGGATTCCCAAGCTTTCTGCCAAGTGGTATAAGGATTTTCTAACCAACGACAGCTTCAGTAACAAAAAACCAACAGTCGGAAAGTTATTCAGGAACAAAAATATCTTTAAAAAGCAACACTTGGAA

Network for GWHGAAZE027183

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.19	Glyco_hydro_1	5	252	2.20E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05350	bglB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	185.275
	SRR3591706	second leaf	45.113
	SRR3591707	mature leaf	40.324
	SRR3591708	Shoot apex	54.287
	SRR3591709	Stem	211.555
	SRR3591710	White floral bud	68.152
	SRR3591711	White flower	90.120
	SRR3591712	Green floral bud	48.790
	SRR3591713	Yellow flower	155.334
SRP173429	SRR8316895	Juvenile bud stage	49.887
	SRR8316896	Juvenile bud stage	40.375
	SRR8316897	Juvenile bud stage	15.260
	SRR8316894	Third green stage	19.664
	SRR8316900	Third green stage	82.499
	SRR8316901	Third green stage	72.711
	SRR8316898	Complete white stage	29.707
	SRR8316899	Complete white stage	135.056
	SRR8316903	Complete white stage	53.195
	SRR8316902	Silver flowering stage	14.107
	SRR8316904	Silver flowering stage	27.902
	SRR8316905	Silver flowering stage	12.630
	SRR8316906	Gold flowering stage	54.524
	SRR8316907	Gold flowering stage	72.229
	SRR8316908	Gold flowering stage	105.143
SRP132670	SRR6706286	Control	60.883
	SRR6706287	Light intensity 50%	58.637
	SRR6706288	Light intensity 20%	61.282
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.408
	CNS0095593	Slightly white alabastrum(diploid) 2	52.595
	CNS0095594	Slightly white alabastrum(diploid) 3	53.902
	CNS0095595	Whole white alabastrum(diploid) 2	48.228
	CNS0095596	Whole white alabastrum(diploid) 3	57.627
	CNS0095597	Whole white alabastrum(diploid) 4	63.757
	CNS0095598	Silvery flower (diploied) 1	86.832
	CNS0095599	Silvery flower (diploied) 2	57.548
	CNS0095600	Silvery flower (diploied) 3	44.509
	CNS0095601	Golden flower (diploid) 1	72.324
	CNS0095602	Golden flower (diploid) 2	80.108
	CNS0095603	Golden flower (diploid) 3	78.713
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.344
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.716
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.706
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.660
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.136
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.579
	CNS0095610	Silvery flower (tetraploid) 1	118.174
	CNS0095611	Silvery flower (tetraploid) 2	60.699
	CNS0095612	Silvery flower (tetraploid) 3	41.662
	CNS0095613	Golden flower (tetraploid) 1	78.319
	CNS0095614	Golden flower (tetraploid) 2	75.173
	CNS0095615	Golden flower (tetraploid) 3	65.058
CRA001975	CRR073297	Stem 1	58.198
	CRR073298	Stem 2	38.277
	CRR073299	Stem 3	22.137
	CRR073300	Leaf 1	59.653
	CRR073301	Leaf 2	51.946
	CRR073302	Leaf 3	24.212
	CRR073303	Juvenile bud 1	44.002
	CRR073304	Juvenile bud 2	35.066
	CRR073305	Juvenile bud 3	37.036
	CRR073306	Third green 1	13.989
	CRR073307	Third green 2	13.657
	CRR073308	Third green 3	16.445
	CRR073309	Second white 1	6.140
	CRR073310	Second white 2	7.883
	CRR073311	Second white 3	5.193
	CRR073312	Silver flowering 1	17.811
	CRR073313	Silver flowering 2	11.020
	CRR073314	Silver flowering 3	21.278
	CRR073315	Gold flowering 1	5.368
	CRR073316	Gold flowering 2	14.557
	CRR073317	Gold flowering 3	6.381
	CRR073318	Tawny withering 1	36.868
	CRR073319	Tawny withering 2	44.648
	CRR073320	Tawny withering 3	41.443