Detail information of GWHGAAZE027211


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002533739.10Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
COGYP_003444757.11E-23alpha-L-glutamate ligase
Swissprottr|Q9LSQ4|GH36_ARATH0Indole-3-acetic acid-amido synthetase GH3.6
trEMBLtr|B9T670|B9T670_RICCO0Indole-3-acetic acid-amido synthetase GH3.6, putative {ECO:0000313|EMBL:EEF28642.1}
TAIR10AT5G54510.10Auxin-responsive GH3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1633061316332977+
GWHAAZE00000008mRNA1633061316332977+
GWHAAZE00000008exon1633061316330935+
GWHAAZE00000008exon1633135816332289+
GWHAAZE00000008exon1633239116332977+
GWHAAZE00000008CDS1633061316330935+
GWHAAZE00000008CDS1633135816332289+
GWHAAZE00000008CDS1633239116332977+
Transcript Sequence

Network for GWHGAAZE027211

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03321.14GH3275781.90E-202
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14487GH3 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.588
SRR3591706second leaf1.018
SRR3591707mature leaf0.428
SRR3591708Shoot apex17.557
SRR3591709Stem7.574
SRR3591710White floral bud186.040
SRR3591711White flower577.923
SRR3591712Green floral bud253.217
SRR3591713Yellow flower631.996
SRP173429 SRR8316895Juvenile bud stage 1.195
SRR8316896Juvenile bud stage 23.494
SRR8316897Juvenile bud stage 17.208
SRR8316894Third green stage 22.048
SRR8316900Third green stage 102.046
SRR8316901Third green stage 76.413
SRR8316898Complete white stage 2.678
SRR8316899Complete white stage 4.921
SRR8316903Complete white stage 5.643
SRR8316902Silver flowering stage21.998
SRR8316904Silver flowering stage31.908
SRR8316905Silver flowering stage17.815
SRR8316906Gold flowering stage 73.479
SRR8316907Gold flowering stage 173.521
SRR8316908Gold flowering stage 92.249
SRP132670SRR6706286Control225.354
SRR6706287Light intensity 50%193.212
SRR6706288Light intensity 20%214.903
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.163
CNS0095593Slightly white alabastrum(diploid) 29.189
CNS0095594Slightly white alabastrum(diploid) 316.635
CNS0095595Whole white alabastrum(diploid) 214.601
CNS0095596Whole white alabastrum(diploid) 325.282
CNS0095597Whole white alabastrum(diploid) 451.298
CNS0095598Silvery flower (diploied) 121.557
CNS0095599Silvery flower (diploied) 221.113
CNS0095600Silvery flower (diploied) 3149.303
CNS0095601Golden flower (diploid) 122.299
CNS0095602Golden flower (diploid) 2197.982
CNS0095603Golden flower (diploid) 3182.111
CNS0095604Slightly white alabastrum(tetraploid) 124.922
CNS0095605Slightly white alabastrum(tetraploid) 237.686
CNS0095606Slightly white alabastrum(tetraploid) 37.833
CNS0095607Whole white alabastrum(tetraploid) 150.556
CNS0095608Whole white alabastrum(tetraploid) 251.908
CNS0095609Whole white alabastrum(tetraploid) 3275.801
CNS0095610Silvery flower (tetraploid) 1360.287
CNS0095611Silvery flower (tetraploid) 2110.647
CNS0095612Silvery flower (tetraploid) 3127.756
CNS0095613Golden flower (tetraploid) 1376.602
CNS0095614Golden flower (tetraploid) 2292.639
CNS0095615Golden flower (tetraploid) 3278.820
CRA001975CRR073297Stem 16.296
CRR073298Stem 216.461
CRR073299Stem 311.185
CRR073300Leaf 138.311
CRR073301Leaf 226.584
CRR073302Leaf 343.695
CRR073303Juvenile bud 116.700
CRR073304Juvenile bud 237.049
CRR073305Juvenile bud 317.455
CRR073306Third green 132.157
CRR073307Third green 246.254
CRR073308Third green 333.724
CRR073309Second white 1140.433
CRR073310Second white 2103.831
CRR073311Second white 3198.013
CRR073312Silver flowering 1499.194
CRR073313Silver flowering 2538.728
CRR073314Silver flowering 3497.331
CRR073315Gold flowering 10.065
CRR073316Gold flowering 20.081
CRR073317Gold flowering 30.046
CRR073318Tawny withering 10.842
CRR073319Tawny withering 20.379
CRR073320Tawny withering 31.984