Gene detail

Detail information of GWHGAAZE027216

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32235.1	0	hypothetical protein JCGZ_13842 [Jatropha curcas]
COG	YP_003669431.1	6E-74	50S ribosomal protein L2
Swissprot	tr\|P29766\|RL8_SOLLC	0	60S ribosomal protein L8
trEMBL	tr\|A0A067KJ21\|A0A067KJ21_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP32235.1}
TAIR10	AT4G36130.1	1E-142	Ribosomal protein L2 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16408597	16411306	+
GWHAAZE00000008	mRNA	16408597	16411306	+
GWHAAZE00000008	exon	16408597	16409036	+
GWHAAZE00000008	exon	16410964	16411306	+
GWHAAZE00000008	CDS	16408597	16409036	+
GWHAAZE00000008	CDS	16410964	16411306	+

Transcript Sequence
>GWHTAAZE027250 ATGGGTCGTGTAATCAGAGCTCAGCGTAAGGGTGCCGGTTCAGTCTTCAAATCCCACACCCACCACCGCAAGGGTCCGGCGAGGTTCCGTTCCCTCGACTTCGGCGAGCGAAACGGCTACCTCAAGGGAGTAATCACTGAAATCATCCACGATCCGGGTCGTGGAGCTCCGCTTGCCCGAGTTACCTTCCGTCACCCATTCCGGTTCAAGCACCAGAAGGAACTCTTCGTCGCCGCCGAGGGGATGTATACTGGGCAGTTTGTTTTCTGTGGAAAGAAGGCTAATTTGATGGTTGGAAATGTGCTTCCTCTTAGATCTATTCCTGAAGGTGCTGTTGTTTGCAATGTTGAGCATCATGTTGGTGACCGTGGTGTGTTGGCTAGGGCTTCTGGTGATTACGCTATTGTTATCAGTCACAATCCCGATAATGGGACTTCAAGGATCAAACTACCTTCAGGAGCAAAGAAAATTGTTCCAAGTGGGTGCCGTGCCATGATTGGCCAGGTTGCTGGGGGAGGACGTACTGAGAAGCCGATGCTCAAGGCTGGAAACGCATATCACAAATACAGGGTGAAGCGCAACTGCTGGCCCAAGGTTCGTGGTGTGGCCATGAATCCCGTGGAGCATCCCCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTTCGTCGTGATGCCCCACCTGGCCAAAAGGTTGGTCTCATTGCTGCTAGGAGGACTGGTCGTCTTCGTGGACAAGCTGCTGCTACTGCTTCCAAGTCTGACAAGGCTTAG

Network for GWHGAAZE027216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00181.24	Ribosomal_L2	13	89	2.90E-17
PF03947.19	Ribosomal_L2_C	98	224	6.40E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02938	RP-L8e, RPL8	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	476.889
	SRR3591706	second leaf	168.313
	SRR3591707	mature leaf	110.098
	SRR3591708	Shoot apex	596.089
	SRR3591709	Stem	236.120
	SRR3591710	White floral bud	197.785
	SRR3591711	White flower	240.816
	SRR3591712	Green floral bud	397.967
	SRR3591713	Yellow flower	188.338
SRP173429	SRR8316895	Juvenile bud stage	240.579
	SRR8316896	Juvenile bud stage	325.569
	SRR8316897	Juvenile bud stage	189.724
	SRR8316894	Third green stage	119.640
	SRR8316900	Third green stage	414.477
	SRR8316901	Third green stage	402.134
	SRR8316898	Complete white stage	102.312
	SRR8316899	Complete white stage	386.328
	SRR8316903	Complete white stage	128.215
	SRR8316902	Silver flowering stage	101.687
	SRR8316904	Silver flowering stage	92.655
	SRR8316905	Silver flowering stage	50.764
	SRR8316906	Gold flowering stage	167.803
	SRR8316907	Gold flowering stage	180.931
	SRR8316908	Gold flowering stage	248.167
SRP132670	SRR6706286	Control	222.685
	SRR6706287	Light intensity 50%	214.339
	SRR6706288	Light intensity 20%	235.871
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	425.797
	CNS0095593	Slightly white alabastrum(diploid) 2	513.685
	CNS0095594	Slightly white alabastrum(diploid) 3	424.644
	CNS0095595	Whole white alabastrum(diploid) 2	368.391
	CNS0095596	Whole white alabastrum(diploid) 3	401.737
	CNS0095597	Whole white alabastrum(diploid) 4	293.565
	CNS0095598	Silvery flower (diploied) 1	235.561
	CNS0095599	Silvery flower (diploied) 2	223.258
	CNS0095600	Silvery flower (diploied) 3	204.717
	CNS0095601	Golden flower (diploid) 1	218.151
	CNS0095602	Golden flower (diploid) 2	224.025
	CNS0095603	Golden flower (diploid) 3	217.363
	CNS0095604	Slightly white alabastrum(tetraploid) 1	420.634
	CNS0095605	Slightly white alabastrum(tetraploid) 2	438.769
	CNS0095606	Slightly white alabastrum(tetraploid) 3	552.903
	CNS0095607	Whole white alabastrum(tetraploid) 1	250.238
	CNS0095608	Whole white alabastrum(tetraploid) 2	215.084
	CNS0095609	Whole white alabastrum(tetraploid) 3	400.272
	CNS0095610	Silvery flower (tetraploid) 1	232.650
	CNS0095611	Silvery flower (tetraploid) 2	224.408
	CNS0095612	Silvery flower (tetraploid) 3	222.697
	CNS0095613	Golden flower (tetraploid) 1	208.536
	CNS0095614	Golden flower (tetraploid) 2	240.706
	CNS0095615	Golden flower (tetraploid) 3	230.552
CRA001975	CRR073297	Stem 1	332.855
	CRR073298	Stem 2	346.405
	CRR073299	Stem 3	519.462
	CRR073300	Leaf 1	359.098
	CRR073301	Leaf 2	365.357
	CRR073302	Leaf 3	484.505
	CRR073303	Juvenile bud 1	414.397
	CRR073304	Juvenile bud 2	347.760
	CRR073305	Juvenile bud 3	374.807
	CRR073306	Third green 1	142.827
	CRR073307	Third green 2	138.164
	CRR073308	Third green 3	126.719
	CRR073309	Second white 1	193.871
	CRR073310	Second white 2	121.050
	CRR073311	Second white 3	89.967
	CRR073312	Silver flowering 1	148.123
	CRR073313	Silver flowering 2	234.059
	CRR073314	Silver flowering 3	151.224
	CRR073315	Gold flowering 1	156.304
	CRR073316	Gold flowering 2	164.953
	CRR073317	Gold flowering 3	196.056
	CRR073318	Tawny withering 1	318.026
	CRR073319	Tawny withering 2	249.306
	CRR073320	Tawny withering 3	315.195