Gene detail

Detail information of GWHGAAZE027217

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32235.1	0	hypothetical protein JCGZ_13842 [Jatropha curcas]
COG	YP_003669431.1	6E-74	50S ribosomal protein L2
Swissprot	tr\|P29766\|RL8_SOLLC	0	60S ribosomal protein L8
trEMBL	tr\|A0A067KJ21\|A0A067KJ21_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP32235.1}
TAIR10	AT4G36130.1	1E-142	Ribosomal protein L2 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16428858	16430738	+
GWHAAZE00000008	mRNA	16428858	16430738	+
GWHAAZE00000008	exon	16428858	16429297	+
GWHAAZE00000008	exon	16430396	16430738	+
GWHAAZE00000008	CDS	16428858	16429297	+
GWHAAZE00000008	CDS	16430396	16430738	+

Transcript Sequence
>GWHTAAZE027251 ATGGGTCGTGTAATCAGAGCTCAGCGTAAGGGTGCGGGTTCAGTCTTCAAATCCCACACCCACCACCGCAAAGGTCCGGCGAGGTTCCGTTCCCTCGACTTCGGCGAGCGAAACGGCTACCTCAAGGGAGTAATCACTGAAATCATCCACGATCCGGGTCGTGGAGCTCCGCTTGCCCGAGTTACCTTCCGTCACCCATTCCGGTTCAAGCACCAGAAGGAACTCTTCGTCGCCGCCGAGGGGATGTATACTGGGCAGTTTGTTTTCTGTGGAAAGAAGGCTAATTTGATGGTTGGAAATGTGCTTCCTCTTAGATCTATTCCTGAAGGTGCTGTTGTTTGCAATGTTGAGCATCATGTTGGTGACCGTGGTGTGTTGGCTAGGGCTTCTGGTGATTACGCTATTGTTATCAGTCACAATCCCGATAATGGGACTTCAAGGATCAAACTACCTTCAGGTGCAAAGAAAATTGTTCCAAGTGGGTGCCGTGCCATGATTGGCCAGGTTGCTGGGGGAGGACGTACTGAGAAGCCGATGCTCAAGGCTGGAAACGCATATCACAAATACAGGGTGAAGCGCAACTGCTGGCCAAAGGTTCGTGGTGTTGCTATGAATCCCGTGGAGCATCCCCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTTCGTCGTGATGCCCCACCTGGCCAAAAGGTTGGTCTCATTGCTGCTAGAAGGACTGGTCGTCTTCGTGGACAAGCTGCTGCTACTGCTTCCAAGTCTGACAAGGCTTAG

Network for GWHGAAZE027217

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00181.24	Ribosomal_L2	13	89	2.90E-17
PF03947.19	Ribosomal_L2_C	98	224	6.40E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02938	RP-L8e, RPL8	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	601.001
	SRR3591706	second leaf	220.334
	SRR3591707	mature leaf	131.029
	SRR3591708	Shoot apex	749.311
	SRR3591709	Stem	318.415
	SRR3591710	White floral bud	251.277
	SRR3591711	White flower	315.494
	SRR3591712	Green floral bud	455.850
	SRR3591713	Yellow flower	232.544
SRP173429	SRR8316895	Juvenile bud stage	397.604
	SRR8316896	Juvenile bud stage	550.978
	SRR8316897	Juvenile bud stage	254.295
	SRR8316894	Third green stage	205.128
	SRR8316900	Third green stage	738.142
	SRR8316901	Third green stage	707.247
	SRR8316898	Complete white stage	145.536
	SRR8316899	Complete white stage	718.885
	SRR8316903	Complete white stage	203.158
	SRR8316902	Silver flowering stage	118.460
	SRR8316904	Silver flowering stage	113.108
	SRR8316905	Silver flowering stage	61.687
	SRR8316906	Gold flowering stage	217.333
	SRR8316907	Gold flowering stage	252.382
	SRR8316908	Gold flowering stage	279.183
SRP132670	SRR6706286	Control	578.099
	SRR6706287	Light intensity 50%	582.470
	SRR6706288	Light intensity 20%	624.868
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	739.606
	CNS0095593	Slightly white alabastrum(diploid) 2	902.429
	CNS0095594	Slightly white alabastrum(diploid) 3	684.866
	CNS0095595	Whole white alabastrum(diploid) 2	629.219
	CNS0095596	Whole white alabastrum(diploid) 3	707.057
	CNS0095597	Whole white alabastrum(diploid) 4	490.277
	CNS0095598	Silvery flower (diploied) 1	429.153
	CNS0095599	Silvery flower (diploied) 2	393.039
	CNS0095600	Silvery flower (diploied) 3	327.156
	CNS0095601	Golden flower (diploid) 1	400.740
	CNS0095602	Golden flower (diploid) 2	351.493
	CNS0095603	Golden flower (diploid) 3	335.781
	CNS0095604	Slightly white alabastrum(tetraploid) 1	697.749
	CNS0095605	Slightly white alabastrum(tetraploid) 2	693.200
	CNS0095606	Slightly white alabastrum(tetraploid) 3	932.863
	CNS0095607	Whole white alabastrum(tetraploid) 1	364.657
	CNS0095608	Whole white alabastrum(tetraploid) 2	319.581
	CNS0095609	Whole white alabastrum(tetraploid) 3	669.863
	CNS0095610	Silvery flower (tetraploid) 1	331.622
	CNS0095611	Silvery flower (tetraploid) 2	323.594
	CNS0095612	Silvery flower (tetraploid) 3	291.610
	CNS0095613	Golden flower (tetraploid) 1	237.676
	CNS0095614	Golden flower (tetraploid) 2	317.965
	CNS0095615	Golden flower (tetraploid) 3	246.691
CRA001975	CRR073297	Stem 1	547.803
	CRR073298	Stem 2	603.853
	CRR073299	Stem 3	803.210
	CRR073300	Leaf 1	619.820
	CRR073301	Leaf 2	641.622
	CRR073302	Leaf 3	845.099
	CRR073303	Juvenile bud 1	668.106
	CRR073304	Juvenile bud 2	548.868
	CRR073305	Juvenile bud 3	655.842
	CRR073306	Third green 1	175.248
	CRR073307	Third green 2	158.527
	CRR073308	Third green 3	167.469
	CRR073309	Second white 1	189.921
	CRR073310	Second white 2	122.852
	CRR073311	Second white 3	89.702
	CRR073312	Silver flowering 1	145.218
	CRR073313	Silver flowering 2	241.723
	CRR073314	Silver flowering 3	153.745
	CRR073315	Gold flowering 1	201.365
	CRR073316	Gold flowering 2	216.824
	CRR073317	Gold flowering 3	261.062
	CRR073318	Tawny withering 1	489.743
	CRR073319	Tawny withering 2	378.281
	CRR073320	Tawny withering 3	466.068