Gene detail

Detail information of GWHGAAZE027219

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282942.1	0	PREDICTED: chitin-inducible gibberellin-responsive protein 1-like [Vitis vinifera]
Swissprot	tr\|Q69VG1\|CIGR1_ORYSJ	0	Chitin-inducible gibberellin-responsive protein 1
trEMBL	tr\|F6H2I7\|F6H2I7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46467.1}
TAIR10	AT5G48150.2	2E-142	GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16470829	16472163	-
GWHAAZE00000008	mRNA	16470829	16472163	-
GWHAAZE00000008	exon	16472117	16472163	-
GWHAAZE00000008	exon	16470829	16472011	-
GWHAAZE00000008	CDS	16472117	16472163	-
GWHAAZE00000008	CDS	16470829	16472011	-

Transcript Sequence
>GWHTAAZE027253 ATGGGACCCGATGATGTAGAAGAAGTAATCACGCCAAGTTCTTCATTATATGGAAACCCAGAAGACGAGTTACGTAAACGTTACAATTCTTTGCCAGGAGCCCCACCGGGCAATCTGAAGGAGTTGCTGATGGCATGTGCAAGAGCTCTAGCCGAAAATGAACTCGACAATTTTGAGAAACTGATCCAAAAGGCAAGGGGTGCTGTGTCTATAAGCGGCACACCAATCCAGCGCCTTGGTGCATACATGGTAGAAGGGCTAATCGCGAAGAAAGAGGAATCAGGCAATAACATATATCGAGCCCTGAGGTGTAGGGAACCTGAAGGCGAGGACTTGCTTTCCTACATGCACATCCTTTATGAAATTTGCCCTTACTTGAAGTTTGGTTATATGGCAGCAAATGGTGCCATTGCCGAAGCTTGTAGAAATGAGGACCGGATCCACATTGTAGACTATCAAATCGCTCAGGGGACACAGTGGATGACTCTCTTGCAAGCACTTGCAGCAAGACCTAGAGGTGCCCCTTATGTAAAAATCACTGGGATCGACGACCCATTTTCTAAATACGCTCGAGGGGACAGTTTAGAGGCAGTTGGTACTCAGTTGGCAGCAATTTCGAAGAAATTCAAAATCCCGGTCGAGTTTCATCCAATGCCGGTTTATGCTCCCGATGTCACAAAGGATATGCTCGACGTAAGGCCCGGTGAGGCCTTGGTGGTGAATTTCCCTCTTCAGCTTCACCATACACCTGACGAGAGCGTTGATGTGAATAATCCAAGGGATAAGCTTTTGAGAATGGTGAAGTCGCTTTCGCCGAAAGTGGTCACTTTAGTGGAGCAAGAATCAAACACAAACACGGCCGCTTTTCTCTCGAGGTTCGAAGAGGCGCTCGGGTATTACTCGGCCATGTTTGAGTCGATAGATGTGACGTTGGGGAGGGACAGAAAAGAGCGTATTAATGTGGAGATGCATTGTTTGGCTAGAGATATAGTGAACATTGTGGCTTGTGAGGGGAGGGAGAGAGTGGAACGGCACGAGCTATTGGGCAAGTGGAGGTCGAGGTTTATGATGGCGGGGTTCAGGCAGTACCCACTGAGCTCGTATGTTAACTCGGTGATAGGGAGTTTGCTACGATGCTACTCAGAGTATTATACGTTGGTGGAGAAGGATGGAGCTATGCTGTTGGGGTGGAAGGAGAGGAACCTCATCTCTGCATCTGCTTGGCAATGA

Network for GWHGAAZE027219

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.15	GRAS	39	409	1.80E-125

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.028
	SRR3591706	second leaf	5.252
	SRR3591707	mature leaf	11.921
	SRR3591708	Shoot apex	5.033
	SRR3591709	Stem	22.860
	SRR3591710	White floral bud	19.178
	SRR3591711	White flower	27.011
	SRR3591712	Green floral bud	14.348
	SRR3591713	Yellow flower	22.726
SRP173429	SRR8316895	Juvenile bud stage	14.945
	SRR8316896	Juvenile bud stage	16.022
	SRR8316897	Juvenile bud stage	14.970
	SRR8316894	Third green stage	4.689
	SRR8316900	Third green stage	9.227
	SRR8316901	Third green stage	11.477
	SRR8316898	Complete white stage	3.348
	SRR8316899	Complete white stage	18.088
	SRR8316903	Complete white stage	6.427
	SRR8316902	Silver flowering stage	9.605
	SRR8316904	Silver flowering stage	10.325
	SRR8316905	Silver flowering stage	6.145
	SRR8316906	Gold flowering stage	33.816
	SRR8316907	Gold flowering stage	21.286
	SRR8316908	Gold flowering stage	40.117
SRP132670	SRR6706286	Control	11.316
	SRR6706287	Light intensity 50%	12.862
	SRR6706288	Light intensity 20%	12.265
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.667
	CNS0095593	Slightly white alabastrum(diploid) 2	31.561
	CNS0095594	Slightly white alabastrum(diploid) 3	41.226
	CNS0095595	Whole white alabastrum(diploid) 2	33.753
	CNS0095596	Whole white alabastrum(diploid) 3	10.548
	CNS0095597	Whole white alabastrum(diploid) 4	16.563
	CNS0095598	Silvery flower (diploied) 1	18.064
	CNS0095599	Silvery flower (diploied) 2	24.197
	CNS0095600	Silvery flower (diploied) 3	22.633
	CNS0095601	Golden flower (diploid) 1	64.905
	CNS0095602	Golden flower (diploid) 2	52.417
	CNS0095603	Golden flower (diploid) 3	50.680
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.539
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.320
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.166
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.696
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.159
	CNS0095610	Silvery flower (tetraploid) 1	11.878
	CNS0095611	Silvery flower (tetraploid) 2	13.150
	CNS0095612	Silvery flower (tetraploid) 3	10.996
	CNS0095613	Golden flower (tetraploid) 1	18.646
	CNS0095614	Golden flower (tetraploid) 2	14.701
	CNS0095615	Golden flower (tetraploid) 3	16.249
CRA001975	CRR073297	Stem 1	14.156
	CRR073298	Stem 2	9.488
	CRR073299	Stem 3	9.694
	CRR073300	Leaf 1	11.458
	CRR073301	Leaf 2	11.032
	CRR073302	Leaf 3	8.322
	CRR073303	Juvenile bud 1	9.939
	CRR073304	Juvenile bud 2	10.144
	CRR073305	Juvenile bud 3	10.497
	CRR073306	Third green 1	5.590
	CRR073307	Third green 2	4.023
	CRR073308	Third green 3	4.119
	CRR073309	Second white 1	6.860
	CRR073310	Second white 2	8.251
	CRR073311	Second white 3	6.918
	CRR073312	Silver flowering 1	29.120
	CRR073313	Silver flowering 2	33.443
	CRR073314	Silver flowering 3	21.274
	CRR073315	Gold flowering 1	7.008
	CRR073316	Gold flowering 2	14.232
	CRR073317	Gold flowering 3	11.780
	CRR073318	Tawny withering 1	18.091
	CRR073319	Tawny withering 2	100.182
	CRR073320	Tawny withering 3	15.716