Detail information of GWHGAAZE027220


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010267823.10PREDICTED: uncharacterized protein LOC104604941 [Nelumbo nucifera]
trEMBLtr|U5GX07|U5GX07_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP67169.1}
TAIR10AT5G54630.12E-145zinc finger protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1649228716494278-
GWHAAZE00000008mRNA1649228716494278-
GWHAAZE00000008exon1649362716494278-
GWHAAZE00000008exon1649228716493038-
GWHAAZE00000008CDS1649362716494278-
GWHAAZE00000008CDS1649240716493038-
GWHAAZE00000008three_prime_UTR1649228716492406-
Transcript Sequence

Network for GWHGAAZE027220

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.962
SRR3591706second leaf8.023
SRR3591707mature leaf4.096
SRR3591708Shoot apex9.554
SRR3591709Stem1.329
SRR3591710White floral bud1.763
SRR3591711White flower2.195
SRR3591712Green floral bud2.249
SRR3591713Yellow flower0.114
SRP173429 SRR8316895Juvenile bud stage 4.211
SRR8316896Juvenile bud stage 3.389
SRR8316897Juvenile bud stage 0.771
SRR8316894Third green stage 1.635
SRR8316900Third green stage 4.934
SRR8316901Third green stage 5.170
SRR8316898Complete white stage 0.283
SRR8316899Complete white stage 3.597
SRR8316903Complete white stage 0.430
SRR8316902Silver flowering stage0.694
SRR8316904Silver flowering stage0.887
SRR8316905Silver flowering stage0.412
SRR8316906Gold flowering stage 4.251
SRR8316907Gold flowering stage 2.590
SRR8316908Gold flowering stage 2.588
SRP132670SRR6706286Control3.400
SRR6706287Light intensity 50%3.611
SRR6706288Light intensity 20%4.477
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.278
CNS0095593Slightly white alabastrum(diploid) 22.892
CNS0095594Slightly white alabastrum(diploid) 32.604
CNS0095595Whole white alabastrum(diploid) 23.500
CNS0095596Whole white alabastrum(diploid) 33.106
CNS0095597Whole white alabastrum(diploid) 43.229
CNS0095598Silvery flower (diploied) 12.250
CNS0095599Silvery flower (diploied) 21.526
CNS0095600Silvery flower (diploied) 31.080
CNS0095601Golden flower (diploid) 11.934
CNS0095602Golden flower (diploid) 21.736
CNS0095603Golden flower (diploid) 31.597
CNS0095604Slightly white alabastrum(tetraploid) 15.179
CNS0095605Slightly white alabastrum(tetraploid) 23.722
CNS0095606Slightly white alabastrum(tetraploid) 37.762
CNS0095607Whole white alabastrum(tetraploid) 11.453
CNS0095608Whole white alabastrum(tetraploid) 21.369
CNS0095609Whole white alabastrum(tetraploid) 35.139
CNS0095610Silvery flower (tetraploid) 10.708
CNS0095611Silvery flower (tetraploid) 21.692
CNS0095612Silvery flower (tetraploid) 30.593
CNS0095613Golden flower (tetraploid) 10.350
CNS0095614Golden flower (tetraploid) 20.396
CNS0095615Golden flower (tetraploid) 30.024
CRA001975CRR073297Stem 17.311
CRR073298Stem 26.406
CRR073299Stem 36.089
CRR073300Leaf 16.721
CRR073301Leaf 27.498
CRR073302Leaf 37.530
CRR073303Juvenile bud 15.142
CRR073304Juvenile bud 24.670
CRR073305Juvenile bud 34.740
CRR073306Third green 10.690
CRR073307Third green 20.093
CRR073308Third green 30.170
CRR073309Second white 10.303
CRR073310Second white 20.766
CRR073311Second white 30.631
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.150
CRR073314Silver flowering 30.287
CRR073315Gold flowering 11.513
CRR073316Gold flowering 22.968
CRR073317Gold flowering 31.314
CRR073318Tawny withering 11.311
CRR073319Tawny withering 21.988
CRR073320Tawny withering 31.702