Detail information of GWHGAAZE027229


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009591128.10PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Nicotiana tomentosiformis]
COGYP_007067253.17E-11WD-40 repeat-containing protein
Swissprottr|Q8VZY6|FIE2_MAIZE0Polycomb group protein FIE2
trEMBLtr|B0LUS8|B0LUS8_TOBAC0Fertilization-independent endosperm protein {ECO:0000313|EMBL:ABY84674.1}
TAIR10AT3G20740.13E-165Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1658436616588225-
GWHAAZE00000008mRNA1658436616588225-
GWHAAZE00000008exon1658436616584492-
GWHAAZE00000008exon1658456416584623-
GWHAAZE00000008exon1658472216584785-
GWHAAZE00000008exon1658487416584970-
GWHAAZE00000008exon1658505516585114-
GWHAAZE00000008exon1658540416585475-
GWHAAZE00000008exon1658556316585642-
GWHAAZE00000008exon1658654016586615-
GWHAAZE00000008exon1658674916586841-
GWHAAZE00000008exon1658693816587018-
GWHAAZE00000008exon1658725016587372-
GWHAAZE00000008exon1658748416587549-
GWHAAZE00000008exon1658804916588225-
GWHAAZE00000008CDS1658804916588225-
GWHAAZE00000008CDS1658748416587549-
GWHAAZE00000008CDS1658725016587372-
GWHAAZE00000008CDS1658693816587018-
GWHAAZE00000008CDS1658674916586841-
GWHAAZE00000008CDS1658654016586615-
GWHAAZE00000008CDS1658556316585642-
GWHAAZE00000008CDS1658540416585475-
GWHAAZE00000008CDS1658505516585114-
GWHAAZE00000008CDS1658487416584970-
GWHAAZE00000008CDS1658472216584785-
GWHAAZE00000008CDS1658456416584623-
GWHAAZE00000008CDS1658436616584492-
Transcript Sequence

Network for GWHGAAZE027229

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401231570.094
PF00400.33WD401712034.40E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.372
SRR3591706second leaf27.403
SRR3591707mature leaf22.448
SRR3591708Shoot apex47.351
SRR3591709Stem38.893
SRR3591710White floral bud45.574
SRR3591711White flower40.840
SRR3591712Green floral bud39.357
SRR3591713Yellow flower44.519
SRP173429 SRR8316895Juvenile bud stage 15.769
SRR8316896Juvenile bud stage 20.577
SRR8316897Juvenile bud stage 9.529
SRR8316894Third green stage 9.010
SRR8316900Third green stage 24.417
SRR8316901Third green stage 22.204
SRR8316898Complete white stage 11.444
SRR8316899Complete white stage 37.793
SRR8316903Complete white stage 19.761
SRR8316902Silver flowering stage10.551
SRR8316904Silver flowering stage16.451
SRR8316905Silver flowering stage7.271
SRR8316906Gold flowering stage 27.401
SRR8316907Gold flowering stage 27.121
SRR8316908Gold flowering stage 28.224
SRP132670SRR6706286Control14.249
SRR6706287Light intensity 50%16.838
SRR6706288Light intensity 20%18.720
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.823
CNS0095593Slightly white alabastrum(diploid) 218.836
CNS0095594Slightly white alabastrum(diploid) 317.341
CNS0095595Whole white alabastrum(diploid) 214.366
CNS0095596Whole white alabastrum(diploid) 313.460
CNS0095597Whole white alabastrum(diploid) 415.589
CNS0095598Silvery flower (diploied) 120.403
CNS0095599Silvery flower (diploied) 220.559
CNS0095600Silvery flower (diploied) 317.593
CNS0095601Golden flower (diploid) 119.253
CNS0095602Golden flower (diploid) 218.988
CNS0095603Golden flower (diploid) 318.259
CNS0095604Slightly white alabastrum(tetraploid) 119.359
CNS0095605Slightly white alabastrum(tetraploid) 217.802
CNS0095606Slightly white alabastrum(tetraploid) 331.161
CNS0095607Whole white alabastrum(tetraploid) 112.490
CNS0095608Whole white alabastrum(tetraploid) 29.406
CNS0095609Whole white alabastrum(tetraploid) 320.824
CNS0095610Silvery flower (tetraploid) 121.287
CNS0095611Silvery flower (tetraploid) 220.220
CNS0095612Silvery flower (tetraploid) 322.036
CNS0095613Golden flower (tetraploid) 116.905
CNS0095614Golden flower (tetraploid) 217.889
CNS0095615Golden flower (tetraploid) 317.926
CRA001975CRR073297Stem 119.403
CRR073298Stem 221.867
CRR073299Stem 316.425
CRR073300Leaf 119.026
CRR073301Leaf 214.627
CRR073302Leaf 315.056
CRR073303Juvenile bud 112.612
CRR073304Juvenile bud 210.328
CRR073305Juvenile bud 312.607
CRR073306Third green 16.581
CRR073307Third green 26.854
CRR073308Third green 37.811
CRR073309Second white 17.276
CRR073310Second white 26.024
CRR073311Second white 34.431
CRR073312Silver flowering 14.226
CRR073313Silver flowering 26.080
CRR073314Silver flowering 37.337
CRR073315Gold flowering 114.145
CRR073316Gold flowering 219.923
CRR073317Gold flowering 315.296
CRR073318Tawny withering 113.480
CRR073319Tawny withering 216.188
CRR073320Tawny withering 314.832