Gene detail

Detail information of GWHGAAZE027233

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHC69829.1	0	pectin methylesterase PME2.1 [Nicotiana tabacum]
COG	YP_007225325.1	1E-40	pectin methylesterase
Swissprot	tr\|Q96575\|PME22_SOLLC	0	Pectinesterase 2.2 (Precursor)
trEMBL	tr\|V9TLK1\|V9TLK1_TOBAC	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT1G11580.1	2E-134	methylesterase PCR A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16650647	16656030	+
GWHAAZE00000008	mRNA	16650647	16656030	+
GWHAAZE00000008	exon	16650647	16651347	+
GWHAAZE00000008	exon	16651771	16652027	+
GWHAAZE00000008	exon	16655339	16656030	+
GWHAAZE00000008	CDS	16650647	16651347	+
GWHAAZE00000008	CDS	16651771	16652027	+
GWHAAZE00000008	CDS	16655339	16656030	+

Transcript Sequence
>GWHTAAZE027267 TTCTTCTCAGCTGTTTTTCTTCTTCCAAACTTGACCAAAACTAATCACTCTAATCTCTCAATCCCTCCCCATATCTGCAATAGAGCCCATGATCCCAACTCATGCCTTAAAATGGTCTCTGAAGTGGTCTCTGATGGGGTAACCGAATCCAATGGTGTAGCTCTACTGCAAAAGTCCTTGTTGAAATATGTCGAACACATGGAAAGTGCAGCCGAGTTGGTTAGCAAAGCCAAACACCTGATCAATGACAACAACGAGCAAGTGGCTCTAGCCGATTGCCTAGAGCTAATTGACCTGTCCATTGACCGAGTCACTGACTCGGTTGTGGCTCTAGCCAACCGGACCATCCTATCTCACAGCGATGCACAGACATGGCTTAGTAGTGTGCTAACGAACCATGTAACCTGCCTTGATGGACTTCGTGTATTTGGGAAATCATTTATGGTAAAGGTTCTTGAGGATTTGATCTCAAGGGCGAAGGCCTCTTTGGCCATACTTGCTGCAGTGTCGACTTCCAACGAGAAAATGGCAGGGCCACTAAAGGGGAATTTACCATCATGGCTCACGATGATGGATCGGAGACTTCTAGAAAGTGCGGCCAAGGACATTAAAGCGGATGTTGTGGTGGCACAAGACGGAAGTGGGAATTATTCAACAGTCACCGAGGCAGTTGCATCAGTTCCTAATAATAGTAAGAACCGCTACCAACAACTATTGATGTCGTACCGCCCTGGTGGAGAATGTGTTTGGTTCTATGAAACCGGCGGAAAAGACTCTCGTGTAGAGGTGACCGGTTCGCCACTAGTCACCTACGGCTGCAATGCAGCGCGGCAGGTGGTGGTGTGCAGAAAGAGAAGTATGGAGATCAGGGAGAAGTATGGATCCGGGTACGAGCGTGGTGTAGGCGAGGAGGGATGGTGGTTGATGGACACCGGCGGTTTTAGGGTGTCGGCAGTCACTGCTGTTGGTGATGGATTCATATTACAAGACGTTTGTGTGCAAAACACAGCCGGGCCAGAGAAGCATCAAGCGGTGGCACTCAGAGTTGGAGCTGACCAATCTGTCATAAACCGCTGTCTCATTGACGCTTACCAAGACACTCTCTATGCCCACTCCCTCAGACAATTCTACAGAGACTGCAACATCACTGGAACTGTGGACTTCATATTTGGCAACGCGGCTGTGGTGCTCCAAAACTGCAAAATCATAGCCCGAAAGCCAATGACCAACCAAAAGAACATGGTCACAGCCCAAGGAAGAACAGACCCAAATCAGAACACTGGCACTTCAATCCAAAACTGTGACATTATAGCTAGCTCCGATCTCGCCCCAGTTAAAGATTTGTTCAAAACGTATCTTGGTCGTCCATGGAAGGAATTTTCAACAACGGTTGTGATGCAATCATACATGGGTGATCTTATTGATCCGGCTGGTTGGGCGGAGTGGGATGGGGATTTTGCGTTAAAGACATTGTATTACGGGGAGTATATGAATAGAGGGCCAGGTGCAGGTGTTAGTAAGAGAGTGAAATGGCCCGGTTATCATGTAATTAGGAATGCGTCCGTGGCTATGAAGTTCACAGTGTCAGAGCTCATTCAAGGAGGGACATGGTTGAAATCTACCGGAGTAGCTTTCACCGAAGGATTATGA

Network for GWHGAAZE027233

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	25	142	5.00E-18
PF01095.20	Pectinesterase	206	235	6.80E-05
PF01095.20	Pectinesterase	309	534	1.20E-113

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.169
	SRR3591706	second leaf	2.280
	SRR3591707	mature leaf	1.041
	SRR3591708	Shoot apex	9.837
	SRR3591709	Stem	26.541
	SRR3591710	White floral bud	63.214
	SRR3591711	White flower	20.267
	SRR3591712	Green floral bud	54.528
	SRR3591713	Yellow flower	2.568
SRP173429	SRR8316895	Juvenile bud stage	11.921
	SRR8316896	Juvenile bud stage	9.685
	SRR8316897	Juvenile bud stage	18.640
	SRR8316894	Third green stage	3.628
	SRR8316900	Third green stage	12.495
	SRR8316901	Third green stage	10.660
	SRR8316898	Complete white stage	6.828
	SRR8316899	Complete white stage	16.273
	SRR8316903	Complete white stage	8.665
	SRR8316902	Silver flowering stage	1.104
	SRR8316904	Silver flowering stage	1.397
	SRR8316905	Silver flowering stage	0.683
	SRR8316906	Gold flowering stage	0.316
	SRR8316907	Gold flowering stage	1.356
	SRR8316908	Gold flowering stage	1.858
SRP132670	SRR6706286	Control	20.169
	SRR6706287	Light intensity 50%	22.207
	SRR6706288	Light intensity 20%	23.676
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.872
	CNS0095593	Slightly white alabastrum(diploid) 2	20.540
	CNS0095594	Slightly white alabastrum(diploid) 3	15.072
	CNS0095595	Whole white alabastrum(diploid) 2	13.945
	CNS0095596	Whole white alabastrum(diploid) 3	16.322
	CNS0095597	Whole white alabastrum(diploid) 4	14.651
	CNS0095598	Silvery flower (diploied) 1	13.155
	CNS0095599	Silvery flower (diploied) 2	11.868
	CNS0095600	Silvery flower (diploied) 3	7.187
	CNS0095601	Golden flower (diploid) 1	8.340
	CNS0095602	Golden flower (diploid) 2	6.565
	CNS0095603	Golden flower (diploid) 3	7.673
	CNS0095604	Slightly white alabastrum(tetraploid) 1	112.778
	CNS0095605	Slightly white alabastrum(tetraploid) 2	107.553
	CNS0095606	Slightly white alabastrum(tetraploid) 3	188.896
	CNS0095607	Whole white alabastrum(tetraploid) 1	58.443
	CNS0095608	Whole white alabastrum(tetraploid) 2	85.342
	CNS0095609	Whole white alabastrum(tetraploid) 3	156.036
	CNS0095610	Silvery flower (tetraploid) 1	21.681
	CNS0095611	Silvery flower (tetraploid) 2	31.744
	CNS0095612	Silvery flower (tetraploid) 3	14.563
	CNS0095613	Golden flower (tetraploid) 1	2.934
	CNS0095614	Golden flower (tetraploid) 2	4.302
	CNS0095615	Golden flower (tetraploid) 3	0.724
CRA001975	CRR073297	Stem 1	22.378
	CRR073298	Stem 2	23.602
	CRR073299	Stem 3	27.890
	CRR073300	Leaf 1	24.077
	CRR073301	Leaf 2	29.401
	CRR073302	Leaf 3	37.581
	CRR073303	Juvenile bud 1	47.687
	CRR073304	Juvenile bud 2	56.626
	CRR073305	Juvenile bud 3	50.852
	CRR073306	Third green 1	8.037
	CRR073307	Third green 2	8.598
	CRR073308	Third green 3	8.538
	CRR073309	Second white 1	1.202
	CRR073310	Second white 2	0.228
	CRR073311	Second white 3	0.382
	CRR073312	Silver flowering 1	0.027
	CRR073313	Silver flowering 2	0.028
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.034
	CRR073316	Gold flowering 2	0.807
	CRR073317	Gold flowering 3	1.781
	CRR073318	Tawny withering 1	9.456
	CRR073319	Tawny withering 2	3.997
	CRR073320	Tawny withering 3	9.761