Gene detail

Detail information of GWHGAAZE027234

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003634707.1	2.5913E-160	PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
Swissprot	tr\|Q8LH03\|DDRGK_ORYSJ	5E-100	DDRGK domain-containing protein 1 (Precursor)
trEMBL	tr\|D7T0B0\|D7T0B0_VITVI	1E-160	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23939.3}
TAIR10	AT4G27120.2	3E-60	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16657009	16660831	+
GWHAAZE00000008	mRNA	16657009	16660831	+
GWHAAZE00000008	exon	16657009	16657113	+
GWHAAZE00000008	exon	16657755	16657910	+
GWHAAZE00000008	exon	16658064	16658172	+
GWHAAZE00000008	exon	16658446	16658585	+
GWHAAZE00000008	exon	16658891	16658992	+
GWHAAZE00000008	exon	16659092	16659253	+
GWHAAZE00000008	exon	16659813	16659869	+
GWHAAZE00000008	exon	16660095	16660131	+
GWHAAZE00000008	exon	16660626	16660831	+
GWHAAZE00000008	CDS	16657009	16657113	+
GWHAAZE00000008	CDS	16657755	16657910	+
GWHAAZE00000008	CDS	16658064	16658172	+
GWHAAZE00000008	CDS	16658446	16658585	+
GWHAAZE00000008	CDS	16658891	16658992	+
GWHAAZE00000008	CDS	16659092	16659253	+
GWHAAZE00000008	CDS	16659813	16659869	+
GWHAAZE00000008	CDS	16660095	16660131	+
GWHAAZE00000008	CDS	16660626	16660831	+

Transcript Sequence
>GWHTAAZE027268 ATGAAAGCAGGGGAAGTGATTACAAGAGATCCAGATTCCGGCGAGTCGTTGTCGGTATTGTCTCAGTCTACTAGGAATGGGACGGCGACGGTGATGGAAGTGACAATAGCTGTCAGTAGCCAAATTTTAAAAAACATGGAGGATATCTTTGTGGCAATTCTTTCAATGCTTCTCATGTTAGCTTTAGTACCCCTTTTTCTGTGGAAACGTCGTCAGATTTCACAATCTCACGATGAGCAGCATGAAGAAGAGCAAGTTCAGGTTCGGCAAAGGGAAACTGTAGTGCGGCCAAGTGGTGGTGGTGGTCGTCGCATGCGTAGAAGACCAGCCTCAGCTGCTAGCACATCTTCAGCCCCAGCAACTGTAGAAGCAACTGAAATGCCGTTTCTCTTCAACATGGAGACAGAACCTGTTGATGGAAGTGATGAGGAAGATGCTGCAGCAGAGCATTCTAATGCTAAAGCAAAGAAGAGAGAAAAGAAAAGACAAGAGCGGGAAGCTCAACGACAGGCTGAAGAGGCTGCACATGGATCAAGGCAAACGAAACAGGACTACTATGCGGAAATGAGGAGGAGAAAGGATGAGGAGCGCGAAGCACAAGAACGGATGCTGGAAGAAGAGGCCAAGGCTCAAAAGGCTAAGGAGGAGGAAGCCGCTGCCTTAGAGTTTGAAAAGTGGAAAGGGGAGTTTTCAGTCGATGCTGAAGGCACTACAGAAAATGAAATGCAAGATGGAAGCCAGGGCTTGCTTTTTGATTTTGTGGAATACATTAAGAAACACAAATGTGTTCCTTTGGAGGATCTTGCTGCAGAATTCAAATTACGGACTCAGGACTGTATCAATAGGATAACCTCGTTGGAAAGTATGGGGCGCCTATCTGGTGTGATGGATGATAGAGGAAAATACATATACATCTCACTAGAAGAAATGAAGGCAGTTGCTGACTATATAAAGCGCGAGGGTAGGGTTGGCATTTCACATTTAGCCAGCCAGTCCAACCAGTTCATAGATTTGGAACCAAAAGCTCAGCTTGTTGAAGATATCAGCGTGGTCGAGGAGATTTCTGCTGCTTGA

Network for GWHGAAZE027234

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0194

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09756.10	DDRGK	152	336	1.60E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.638
	SRR3591706	second leaf	20.891
	SRR3591707	mature leaf	24.531
	SRR3591708	Shoot apex	27.366
	SRR3591709	Stem	23.449
	SRR3591710	White floral bud	30.906
	SRR3591711	White flower	27.757
	SRR3591712	Green floral bud	30.518
	SRR3591713	Yellow flower	25.493
SRP173429	SRR8316895	Juvenile bud stage	20.317
	SRR8316896	Juvenile bud stage	25.240
	SRR8316897	Juvenile bud stage	12.901
	SRR8316894	Third green stage	11.856
	SRR8316900	Third green stage	33.467
	SRR8316901	Third green stage	30.535
	SRR8316898	Complete white stage	11.887
	SRR8316899	Complete white stage	42.889
	SRR8316903	Complete white stage	24.645
	SRR8316902	Silver flowering stage	9.677
	SRR8316904	Silver flowering stage	13.494
	SRR8316905	Silver flowering stage	8.055
	SRR8316906	Gold flowering stage	19.134
	SRR8316907	Gold flowering stage	19.046
	SRR8316908	Gold flowering stage	21.629
SRP132670	SRR6706286	Control	49.424
	SRR6706287	Light intensity 50%	46.185
	SRR6706288	Light intensity 20%	44.452
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.326
	CNS0095593	Slightly white alabastrum(diploid) 2	24.733
	CNS0095594	Slightly white alabastrum(diploid) 3	25.030
	CNS0095595	Whole white alabastrum(diploid) 2	20.731
	CNS0095596	Whole white alabastrum(diploid) 3	19.584
	CNS0095597	Whole white alabastrum(diploid) 4	23.120
	CNS0095598	Silvery flower (diploied) 1	26.480
	CNS0095599	Silvery flower (diploied) 2	27.627
	CNS0095600	Silvery flower (diploied) 3	23.646
	CNS0095601	Golden flower (diploid) 1	23.767
	CNS0095602	Golden flower (diploid) 2	21.642
	CNS0095603	Golden flower (diploid) 3	23.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.452
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.497
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.109
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.138
	CNS0095610	Silvery flower (tetraploid) 1	35.244
	CNS0095611	Silvery flower (tetraploid) 2	37.055
	CNS0095612	Silvery flower (tetraploid) 3	30.759
	CNS0095613	Golden flower (tetraploid) 1	21.130
	CNS0095614	Golden flower (tetraploid) 2	33.632
	CNS0095615	Golden flower (tetraploid) 3	19.465
CRA001975	CRR073297	Stem 1	32.313
	CRR073298	Stem 2	33.690
	CRR073299	Stem 3	26.812
	CRR073300	Leaf 1	41.947
	CRR073301	Leaf 2	41.338
	CRR073302	Leaf 3	34.794
	CRR073303	Juvenile bud 1	36.439
	CRR073304	Juvenile bud 2	29.148
	CRR073305	Juvenile bud 3	31.216
	CRR073306	Third green 1	13.781
	CRR073307	Third green 2	14.705
	CRR073308	Third green 3	13.388
	CRR073309	Second white 1	9.915
	CRR073310	Second white 2	12.502
	CRR073311	Second white 3	8.314
	CRR073312	Silver flowering 1	8.207
	CRR073313	Silver flowering 2	6.667
	CRR073314	Silver flowering 3	8.152
	CRR073315	Gold flowering 1	19.600
	CRR073316	Gold flowering 2	17.914
	CRR073317	Gold flowering 3	15.590
	CRR073318	Tawny withering 1	18.219
	CRR073319	Tawny withering 2	17.456
	CRR073320	Tawny withering 3	14.415