Gene detail

Detail information of GWHGAAZE027248

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007032063.1	0	K+ uptake transporter 3 isoform 1 [Theobroma cacao]
COG	YP_003225261.1	1E-107	K potassium transporter
Swissprot	tr\|Q9LD18\|POT4_ARATH	0	Potassium transporter 4
trEMBL	tr\|A0A061EKZ7\|A0A061EKZ7_THECC	0	Potassium transporter {ECO:0000256\|RuleBase:RU321113}
TAIR10	AT3G02050.1	0	K+ uptake transporter 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16805621	16811109	-
GWHAAZE00000008	mRNA	16805621	16811109	-
GWHAAZE00000008	exon	16805621	16806927	-
GWHAAZE00000008	exon	16807596	16807850	-
GWHAAZE00000008	exon	16807932	16808046	-
GWHAAZE00000008	exon	16808389	16808441	-
GWHAAZE00000008	exon	16808537	16808797	-
GWHAAZE00000008	exon	16808940	16808990	-
GWHAAZE00000008	exon	16809686	16809931	-
GWHAAZE00000008	exon	16810014	16810254	-
GWHAAZE00000008	exon	16811029	16811109	-
GWHAAZE00000008	CDS	16811029	16811109	-
GWHAAZE00000008	CDS	16810014	16810254	-
GWHAAZE00000008	CDS	16809686	16809931	-
GWHAAZE00000008	CDS	16808940	16808990	-
GWHAAZE00000008	CDS	16808537	16808797	-
GWHAAZE00000008	CDS	16808389	16808441	-
GWHAAZE00000008	CDS	16807932	16808046	-
GWHAAZE00000008	CDS	16807596	16807850	-
GWHAAZE00000008	CDS	16805834	16806927	-
GWHAAZE00000008	three_prime_UTR	16805621	16805833	-

Transcript Sequence
>GWHTAAZE027282 ATGCCACCAGGAGCAAGTGGAAGGGAAGGATCTAGCGGGGCACCTGCTGAACCACGTCCAAATCAACGTGGGGAGAAGGAGGTGTCTTGGGTAAATACATGCAGGAATCTGTTATTGGCGTATCAAAGCTTTGGTGTGGTATATGGAGACTTGAGCACCTCACCTCTTTATGTCTATAGAAGTGTATTCACTGGGAAGCTACAAAATTATCAAACTCCTGATGCAATATTTGGCGCATTTTCATTGATCTTTTGGACCCTAACTTTAATTCCTTTGCTCAAATATGTGTTCATCATGTTGAGTGCTGATGATAATGGTGAAGGTGGAACAATTGCTCTTTACTCATTGCTTTGCAGGCATGCAAAGTTTAGTTTACTTCCCAATCAACAAGCAGCTGATGAGGAGTTGTCTTCTTACAAATATGGCCCCTCAGGACAGTTCGTTTCCAATTCACCTCTGAAGCGATTCCTTGAGAAGCATAAAAAATCACGCACAGCACTACTTATCGTAGTATTATTGGGTGCTTGCATGGTCATAGGCGATGGTATAATCACTCCTGCAATGTCAGTTCTATCATCAGTATCAGGGCTTCAAACTGCTGAAGAAAATTTGACACAGGGGGAGGTGCTGTTATTAGCCTGTGTCATATTGATTGGCCTTTTCGCACTGCAGCATTCTGGCACTCACAGGGTTGCTTTTTTGTTTGCGCCAATTGTTGTGGTCTGGTTAGTGACAATTTTTGCCATTGGGTTATACAATACCATTCATTGGAATCCAAAAATTGTTTATGCTTTTTCTCCACATTATATCATCAAGTTCTTCCAAGAGACTGGTAAAGACGGTTGGATTTCTCTTGGAGGAGTCCTTCTATGCATAACAGGTACTGAAGCAATGTTTGCTGATCTTGGCCATTTCACTGCCTTGTCAATAAGGCTTGCGTTTGCATTTGCTGTCTACCCTTGTTTGGTAGTACAATATATGGGCCAGGCTGCTTATTTGTCTAAAAACATAACATCCATTCCAAACAGCTTTTATGATTCCATACCTGATGTTGTGTATTGGCCTGTCTTTGTCATTGCCACCCTAGCAGCCATTGTTGCGAGTCAGGCAATCATCACGGCTACCTTCTCTATTATCAAGCAATGCCATGCCCTTGGTTGCTTTCCGCGGGTCAAGGTTGTTCATACCTCCAAACATATTTATGGGCAGATCTATATACCAGAAATAAATTGGATTCTCATGATTCTTACTCTCGCTATAGCTATTGGGTTCCAGGACACAACTATGATTGGAAATGCATATGGCCTTGCTTGCATGTCAGTTATGTTTATCACGACGTGTCTCATGTCACTCGTCGTAACATTTGTCTGGCACAGAAGCTTCCTCCTTGGTGGAGCATTCTTCTTGTTCTTCGGGTTCATCGAGGCCGTCTACCTCTCATCCGCAATCATGAAAGTACCTCAAGGAGGATGGGTATCTCTTTTGCTCGCCTTTGTCTTTATAATCATCATGTTTGTTTGGCATTATGGAACTCGCAGAAAGTACAACTTCGATCTGCACAACAAAGTCTCACTAAAATGGTTACTTGGCCTTGGCCCCAGCCTTGGTATTGTGCGTGTACCCGGAATAGGCCTCGTATACTCCGAATTGGCAACAGGCGTCCCTGCAATATTCTCTCATTTTGTGACCAATCTCCCTGCAATTCACAACGTGTTGGTTTTTGTTTGTGTAAAATCCGTTCCTGTACCATACGTCTCACCGGAAGAGCGGTTTCTCATTGGCCGGATTTGCCCAAGACCCTATAGAATGTACCGATGCATCGTCAGATACGGTTACAAGGACATCCAAAGAGACGATGGCAACTTTGAGAATCAATTAATCAAAAGCATTGCCGAGTTTATTCAGATGGAAGCGGTGGGGCCGCAGTTTTCAACCTTGGATAACACGTCATTTGACGGTCGAATGGCAGTTATAAGCAGCAGAACAATTGAATCTAGCTCTAGTTTAATAGTATCCACAGTCCAAGAAGATTCTCTTGATGCCATTAACTCTATCCAAAGTAGCAAATCCCTAACGCTGCAGAGTTTGCGATCAGCATATGACGATGAAAACCCGCAGTTGAGGAGGCGGCAAGTGAGGTTTCAGTTGCCACATAGCCCAGGGATGGATTCCTTGGTTAGGGAAGAGCTTTTGGACTTGATACTAGCTAAAGAAGCAGGGGTTGCGTATATAATGGGGCACTCTTATGTGAAGGCAAGGAGATCATCTTCTTTTTTGAAAAAGCTTGTGATCGATATTGGGTATTCGTTTCTTCGAAAGAACTGTAGGGGGCCTGGGGTAGCGCTTAACATTCCTCATATTAGCCTCATAGAAGTTGGCATGATTTATTACGTGTAACTCTCTAACGCTCATTTTCTATCTGCATTAGGGTTCTCGCTAAGCTTAGTTTTCATAAAGCGGGTTCTAGTTTTTCTTTTTGGTTTATCAGTTGTGGCTGTGTATAGATGGATGAAAGGATGTTGAGACATAATTTTGGTTTAGGATTTCACATCAGGAACGATCCGAATTTGCTTTGGGCTCTCTGATTAACTTTCTTCTGCTTTTCTATTT

Network for GWHGAAZE027248

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0170

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02705.17	K_trans	41	614	1.80E-191

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0071805	biological_process	potassium ion transmembrane transport
GO:0016020	cellular_component	membrane
GO:0015079	molecular_function	potassium ion transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.357
	SRR3591706	second leaf	19.939
	SRR3591707	mature leaf	26.972
	SRR3591708	Shoot apex	30.621
	SRR3591709	Stem	41.699
	SRR3591710	White floral bud	20.199
	SRR3591711	White flower	23.618
	SRR3591712	Green floral bud	26.943
	SRR3591713	Yellow flower	13.583
SRP173429	SRR8316895	Juvenile bud stage	17.367
	SRR8316896	Juvenile bud stage	30.846
	SRR8316897	Juvenile bud stage	20.384
	SRR8316894	Third green stage	12.145
	SRR8316900	Third green stage	23.235
	SRR8316901	Third green stage	24.963
	SRR8316898	Complete white stage	6.391
	SRR8316899	Complete white stage	28.425
	SRR8316903	Complete white stage	10.093
	SRR8316902	Silver flowering stage	3.744
	SRR8316904	Silver flowering stage	6.377
	SRR8316905	Silver flowering stage	2.941
	SRR8316906	Gold flowering stage	11.153
	SRR8316907	Gold flowering stage	10.252
	SRR8316908	Gold flowering stage	14.944
SRP132670	SRR6706286	Control	27.632
	SRR6706287	Light intensity 50%	24.713
	SRR6706288	Light intensity 20%	25.754
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.198
	CNS0095593	Slightly white alabastrum(diploid) 2	25.394
	CNS0095594	Slightly white alabastrum(diploid) 3	29.091
	CNS0095595	Whole white alabastrum(diploid) 2	22.091
	CNS0095596	Whole white alabastrum(diploid) 3	24.117
	CNS0095597	Whole white alabastrum(diploid) 4	21.771
	CNS0095598	Silvery flower (diploied) 1	26.103
	CNS0095599	Silvery flower (diploied) 2	23.913
	CNS0095600	Silvery flower (diploied) 3	24.575
	CNS0095601	Golden flower (diploid) 1	24.688
	CNS0095602	Golden flower (diploid) 2	32.676
	CNS0095603	Golden flower (diploid) 3	30.742
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.337
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.546
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.330
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.857
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.787
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.561
	CNS0095610	Silvery flower (tetraploid) 1	26.677
	CNS0095611	Silvery flower (tetraploid) 2	33.322
	CNS0095612	Silvery flower (tetraploid) 3	17.772
	CNS0095613	Golden flower (tetraploid) 1	12.052
	CNS0095614	Golden flower (tetraploid) 2	26.188
	CNS0095615	Golden flower (tetraploid) 3	13.203
CRA001975	CRR073297	Stem 1	35.695
	CRR073298	Stem 2	31.941
	CRR073299	Stem 3	38.795
	CRR073300	Leaf 1	30.999
	CRR073301	Leaf 2	30.366
	CRR073302	Leaf 3	28.965
	CRR073303	Juvenile bud 1	29.728
	CRR073304	Juvenile bud 2	17.867
	CRR073305	Juvenile bud 3	42.717
	CRR073306	Third green 1	4.163
	CRR073307	Third green 2	4.054
	CRR073308	Third green 3	5.582
	CRR073309	Second white 1	8.425
	CRR073310	Second white 2	6.211
	CRR073311	Second white 3	5.918
	CRR073312	Silver flowering 1	4.061
	CRR073313	Silver flowering 2	6.217
	CRR073314	Silver flowering 3	4.576
	CRR073315	Gold flowering 1	25.740
	CRR073316	Gold flowering 2	33.972
	CRR073317	Gold flowering 3	30.881
	CRR073318	Tawny withering 1	35.045
	CRR073319	Tawny withering 2	22.636
	CRR073320	Tawny withering 3	28.938