Gene detail

Detail information of GWHGAAZE027249

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010062992.1	0	PREDICTED: serine/threonine-protein kinase PBS1-like [Eucalyptus grandis]
COG	YP_003510864.1	2E-24	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|Q9FE20\|PBS1_ARATH	2E-145	Serine/threonine-protein kinase PBS1
trEMBL	tr\|W9QQ01\|W9QQ01_9ROSA	1E-180	Serine/threonine-protein kinase PBS1 {ECO:0000313\|EMBL:EXB50275.1}
TAIR10	AT3G20530.1	4E-131	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16817120	16818746	-
GWHAAZE00000008	mRNA	16817120	16818746	-
GWHAAZE00000008	exon	16817120	16817383	-
GWHAAZE00000008	exon	16817476	16817840	-
GWHAAZE00000008	exon	16818088	16818277	-
GWHAAZE00000008	exon	16818373	16818536	-
GWHAAZE00000008	exon	16818623	16818746	-
GWHAAZE00000008	CDS	16818623	16818746	-
GWHAAZE00000008	CDS	16818373	16818536	-
GWHAAZE00000008	CDS	16818088	16818277	-
GWHAAZE00000008	CDS	16817476	16817840	-
GWHAAZE00000008	CDS	16817120	16817383	-

Transcript Sequence
>GWHTAAZE027283 ATGAACTGCTTCTCATGTTACATTTCCCAAGATAAATTTGGCAAAAGGTCGTTGAAGAAAAGCATTCGCGAATACAAAGATGCGAGAACTTTAGCCTCAATGACTAATATTTCCTTTGGAAATGAATGTATAAGAAGATTCAGGTCCACTGGAAATGCAAATCTTTCTTCTGAGGTTTTCACATATAAAGAGTTGTGTGCTTCGACTCAGAACTTCAGTTTTGATTTTATGATAGGTGAAGGTGGCTTTGGCAGGGTTTACAAAGGGTATCTTGAATCCAAAAATATGGAAGTTGCAATCAAGGCTCTTGACAAGAATGGGTTCCAAGGGAACAGAGAATTCCTTGTGGAGGTACTAATGTTGAATCTTCTTCATCACACTAACCTTGTAAAGTTGGTTGGTTACTGCGTTGAAGATGATCAGAGGGTCTTAGTTTACGAGTACATGCGCAATGGTTCACTTGAAGATCACCTTCATGACTGGAATACAAGGATGAAAATTGCCAAAGGAGCAGCTAAAGGATTGGAATACCTACACCAAACAGCTTACCCTCCAGTCATTTACCGCGATTTCAAAGCTTCCAACATACTACTAGACGAAAAGTTTAATCCAAAGCTTTCGGATTTTGGAATGGCCAAGCTAGGTCCAACTGATGGCATGACCCACGTATCCACTCGTGTGATGGGAACCTATGGGTATTGTGCTCCCGAATATGCATTGACGGGTCATCTAACAACAAAATCCGATGTATACAGCTTTGGAGTCGTGTTTTTGGAGTTGATCACTGGAAGAAAAGTCTTCGACAGTTCAAGAAAACTCGAAGAACAGAACTTAATCCCTTGGGCGCAAAAATTGATGAGAAACAAGAAGAGGTTTCATTTAGTAGCTGACCCATTGCTGGAAGGGAACTACCCTTTGAAGGGTCTATACCAAGCACTTGCAGTAGCAGATATGTGTGTCCAGGATGAAGCAAATGCGCGGCCTTTGATCAGTGATGTGGTAATCGCGCTCGAGTATCTATGTGATGACATGCCGAGTTCGGGTTCTCCCAAGAGAATTTGTGCTGAAGATGTCAGAAATAATAATGGTGGTTATAAGAGTGGCTGA

Network for GWHGAAZE027249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	77	278	6.80E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.238
	SRR3591706	second leaf	0.187
	SRR3591707	mature leaf	0.107
	SRR3591708	Shoot apex	0.496
	SRR3591709	Stem	2.277
	SRR3591710	White floral bud	168.090
	SRR3591711	White flower	10.173
	SRR3591712	Green floral bud	182.408
	SRR3591713	Yellow flower	7.220
SRP173429	SRR8316895	Juvenile bud stage	10.365
	SRR8316896	Juvenile bud stage	12.374
	SRR8316897	Juvenile bud stage	10.605
	SRR8316894	Third green stage	6.750
	SRR8316900	Third green stage	91.937
	SRR8316901	Third green stage	73.951
	SRR8316898	Complete white stage	0.237
	SRR8316899	Complete white stage	1.966
	SRR8316903	Complete white stage	0.445
	SRR8316902	Silver flowering stage	1.032
	SRR8316904	Silver flowering stage	2.915
	SRR8316905	Silver flowering stage	1.252
	SRR8316906	Gold flowering stage	0.205
	SRR8316907	Gold flowering stage	0.620
	SRR8316908	Gold flowering stage	0.208
SRP132670	SRR6706286	Control	29.845
	SRR6706287	Light intensity 50%	33.466
	SRR6706288	Light intensity 20%	28.661
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	84.079
	CNS0095593	Slightly white alabastrum(diploid) 2	67.634
	CNS0095594	Slightly white alabastrum(diploid) 3	84.340
	CNS0095595	Whole white alabastrum(diploid) 2	240.028
	CNS0095596	Whole white alabastrum(diploid) 3	268.052
	CNS0095597	Whole white alabastrum(diploid) 4	378.567
	CNS0095598	Silvery flower (diploied) 1	7.180
	CNS0095599	Silvery flower (diploied) 2	25.722
	CNS0095600	Silvery flower (diploied) 3	4.528
	CNS0095601	Golden flower (diploid) 1	9.836
	CNS0095602	Golden flower (diploid) 2	5.259
	CNS0095603	Golden flower (diploid) 3	5.430
	CNS0095604	Slightly white alabastrum(tetraploid) 1	185.294
	CNS0095605	Slightly white alabastrum(tetraploid) 2	217.506
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.352
	CNS0095607	Whole white alabastrum(tetraploid) 1	409.235
	CNS0095608	Whole white alabastrum(tetraploid) 2	511.465
	CNS0095609	Whole white alabastrum(tetraploid) 3	184.052
	CNS0095610	Silvery flower (tetraploid) 1	4.527
	CNS0095611	Silvery flower (tetraploid) 2	22.136
	CNS0095612	Silvery flower (tetraploid) 3	40.120
	CNS0095613	Golden flower (tetraploid) 1	9.142
	CNS0095614	Golden flower (tetraploid) 2	2.594
	CNS0095615	Golden flower (tetraploid) 3	26.779
CRA001975	CRR073297	Stem 1	16.136
	CRR073298	Stem 2	15.143
	CRR073299	Stem 3	5.987
	CRR073300	Leaf 1	82.126
	CRR073301	Leaf 2	43.244
	CRR073302	Leaf 3	20.301
	CRR073303	Juvenile bud 1	62.570
	CRR073304	Juvenile bud 2	33.824
	CRR073305	Juvenile bud 3	3.367
	CRR073306	Third green 1	16.851
	CRR073307	Third green 2	20.870
	CRR073308	Third green 3	16.893
	CRR073309	Second white 1	0.717
	CRR073310	Second white 2	3.882
	CRR073311	Second white 3	4.260
	CRR073312	Silver flowering 1	20.341
	CRR073313	Silver flowering 2	17.859
	CRR073314	Silver flowering 3	11.053
	CRR073315	Gold flowering 1	32.292
	CRR073316	Gold flowering 2	11.336
	CRR073317	Gold flowering 3	3.088
	CRR073318	Tawny withering 1	26.395
	CRR073319	Tawny withering 2	29.230
	CRR073320	Tawny withering 3	24.864