Gene detail

Detail information of GWHGAAZE027259

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP43289.1	0	hypothetical protein JCGZ_24210 [Jatropha curcas]
COG	YP_003640654.1	2E-157	alanyl-tRNA synthetase
Swissprot	tr\|P36428\|SYA_ARATH	0	Alanine--tRNA ligase {ECO:0000255\|HAMAP-Rule:MF_03133} (Precursor)
trEMBL	tr\|A0A067LGK7\|A0A067LGK7_JATCU	0	Alanine--tRNA ligase {ECO:0000256\|HAMAP-Rule:MF_03133}
TAIR10	AT1G50200.1	0	Alanyl-tRNA synthetase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16928901	16936232	+
GWHAAZE00000008	mRNA	16928901	16936232	+
GWHAAZE00000008	exon	16928901	16929026	+
GWHAAZE00000008	exon	16929224	16929364	+
GWHAAZE00000008	exon	16929672	16929818	+
GWHAAZE00000008	exon	16930119	16930271	+
GWHAAZE00000008	exon	16930449	16930578	+
GWHAAZE00000008	exon	16931387	16931483	+
GWHAAZE00000008	exon	16931666	16931786	+
GWHAAZE00000008	exon	16932227	16932277	+
GWHAAZE00000008	exon	16932363	16932458	+
GWHAAZE00000008	exon	16932661	16932762	+
GWHAAZE00000008	exon	16933032	16933154	+
GWHAAZE00000008	exon	16933247	16933390	+
GWHAAZE00000008	exon	16933479	16933550	+
GWHAAZE00000008	exon	16933647	16933722	+
GWHAAZE00000008	exon	16933794	16933936	+
GWHAAZE00000008	exon	16934859	16934967	+
GWHAAZE00000008	exon	16935056	16935243	+
GWHAAZE00000008	exon	16935348	16935437	+
GWHAAZE00000008	exon	16935544	16935726	+
GWHAAZE00000008	exon	16935832	16936011	+
GWHAAZE00000008	exon	16936158	16936232	+
GWHAAZE00000008	CDS	16928901	16929026	+
GWHAAZE00000008	CDS	16929224	16929364	+
GWHAAZE00000008	CDS	16929672	16929818	+
GWHAAZE00000008	CDS	16930119	16930271	+
GWHAAZE00000008	CDS	16930449	16930578	+
GWHAAZE00000008	CDS	16931387	16931483	+
GWHAAZE00000008	CDS	16931666	16931786	+
GWHAAZE00000008	CDS	16932227	16932277	+
GWHAAZE00000008	CDS	16932363	16932458	+
GWHAAZE00000008	CDS	16932661	16932762	+
GWHAAZE00000008	CDS	16933032	16933154	+
GWHAAZE00000008	CDS	16933247	16933390	+
GWHAAZE00000008	CDS	16933479	16933550	+
GWHAAZE00000008	CDS	16933647	16933722	+
GWHAAZE00000008	CDS	16933794	16933936	+
GWHAAZE00000008	CDS	16934859	16934967	+
GWHAAZE00000008	CDS	16935056	16935243	+
GWHAAZE00000008	CDS	16935348	16935437	+
GWHAAZE00000008	CDS	16935544	16935726	+
GWHAAZE00000008	CDS	16935832	16936011	+
GWHAAZE00000008	CDS	16936158	16936232	+

Transcript Sequence
>GWHTAAZE027293 ATGAATCAATTCAAGCCTATTTTTTTAGGCACTGCTGATCCAAACACTGCCTTGAGTAAACTCACTCGAGCTTGCGACACCCAGAAGTGTATTCGTGCTGGTGGCAAACACAATGATCTTGACGATGTATTTAAACTACCTACCGATCGAATTTACGCCACCTATTTTGGCGGTGATGAGAAACTAGGTCTACCCGCTGATGATGAAGCTAAAGATTTATGGCTCAAATTTCTTCCGTCTAAACGTGTATTGCCTTTTGGTTGCAAGGATAACTTTTGGGAGATGGGCGATACTGGACCTTGTGGACCCTGCACCGAAATTCATTTTGATAGGATCGGAAATCGTGATGCTGCAGAGTTGGTTAACAATGACGACCCTACGTTGATTGAGATATGGAATCTCGTGTTTATTCAGTTTAACAGGGAAGCTGATGGTACTTTAAAACCTCTTCCTGCTAAGCATGTTGATACTGGATTGGGTTTCGAAAGACTAACTTCTATTCTTCAGAACAAGATGAGCAATTATGACACTGATGTTTTCCTGCCCATATTTGATGCTATCCAAAAGGCAACTGGAGCTCGACCTTATTCTGGAAAGGTTGGGGTAGATGACGTGGACAAAATTGATATGGCTTACAGGGTTGTTGCTGACCACATAAGAACTCTTTCATTTGCAATTGCTGATGGTGCTTGTCCAGGCAATGAAGGGCGTGAATATGTCCTAAGACGCATCCTTCGTCGAGCTGTACGTTATGGAACTGAAGTACTAAAGGCTGAACAAGGGTTTTTCAATGGGTTGGTGAAGGTTGTGGTGGAAGTGATGGGTGGAGTCTTTCCGGAGCTGAAACACTATGAAGCGCACATCAGAGACACGATTGCATCTGAGGAATTAAGTTTTGGCAGAACTTTGCTTCATGATGCATTTGTCTTGTGGGACACCTATGGCTTTCCACTAGATCTAACTCAGTTGATGGCTGAAGAAAGAGGTTTGGTGGTTGACAAAGAGGGTTTTGATATTGCTATGAATGAGGCAAGGGAAAGATCAAGGAATGCTCAGAATAAGCAAGCTGGTAAAGCTATTGTCATGGATGCTGATGCCACCTCAGCGTTGCACAAGAGAGGGGTTGCTCCAACTAATGACGCCTTCAAGTTTATTTGGTTTCAGGATCACAGAAGTGTGATAAAAGCTATTTACACAGGGAGCGAGTTTCTAGAAACTGGTGTTGCTGGCGATGAAGTTGGAGTAATTATGGAAAGTACAAGTTTTTATGCTGAGCAAGGTGGCCAGATATTTGATACTGGAATTCTCGAAGGCCCTTCTGGATCATTTAAAGTTTGTAATGTTCAAATTTTTGGAGGTTTCGTTGTTCATATTGGTTATTTTACTGGAGAGAATGGAAAATTTTATGTGGGTGATAAAGTAGTTTGTAAGGTTGATTATGAAAGGCGTAAATTCATTGCCCCGAACCATACCTGTACGCATATGTTAAACTTTGCTCTCAGGGAGGTACTTGGAGATCATATTGACCAAAAGGGATCCATTGTTCTTCCCGAGAAATTGAGATTTGATTTTTCTCATGGGAAACCTGTAAAGCCTGATGAGCTGAGAAAAATCGAGTCTATTGTGAACGAACAAATTAAAGCAGAACTGGATGTTTTTGCAAAGGAGGCAATCCTGGCTGATGCCAAGCGTGTATATGGTTTACGTGCTGTTTTTGGAGAAGTCTACCCAGATCCTGTTAGAGTTGTTTCAATTGGCCGGAAAGTTGAGGATCTCTTGGCAGATCCAGATAATAAAGCATGGTCAACAATATCCACAGAACTTTGTGGAGGGACCCATATTTCAAATACACGGGAGGCTAAGGCATTTGCCCTTTTATCTGAGGAGGGAATTGCTAAGGGAATCCGAAGAGTTACTGCTGTAACTACAGATGGTGCTTTTAAGGCCCTAGAATTAGCATCCGAGCTTGAGCGAGAAGTAAATGAAGCATCCAAGACGGAAGGCAGCCTGCTCGAACAGAAAGTAACATCTTTGAATGGACGTGTGGAATCGGCACCTATTCCAACAGCCAAGAAATCTGATCTTAAGGCCAAATTATCTGTACTTCAGAATCAAGTGATAAAGGCAAAAAAGAAGATTGCTGAAGAGAATATAAAGGAAGCCGTGAGAGTTGCTACAGAAATGGCAGAAGTTGCTTCTTCTGATGGAAAAGCCTTCTGCATCTCACATGTCAGTGTTGGTTCAGACACCACTGCAATACGTGAAGCAGTTGTTAAAGTCATGGAGCAGAAGGGAATGGCTGCTATGGTTTTTAGCACAGACGAAAATGCGAACAAGACGGTGGTGTGTGCAGGGGTACCCGAGAAAGAGGATAAGAGCAAGCAATTAAAGGTGGTTGATTGGTTGAAGAAAGCTTTGGGCCCTGTTGATGGCAAAGGTGGTGGTGGAAAAGGCGGTCTTGCTCAAGGCCAGGGAAGTTATAAAAAGGAACAGGTAGAGGAGGCGATGAAGGTGGCTACATCATTTGCAGCAATGAGCTTGAGGTGA

Network for GWHGAAZE027259

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01411.20	tRNA-synt_2c	43	303	1.30E-94
PF01411.20	tRNA-synt_2c	305	482	4.70E-42
PF07973.15	tRNA_SAD	580	638	1.90E-17
PF02272.20	DHHA1	695	840	8.40E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01872	AARS, alaS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006419	biological_process	alanyl-tRNA aminoacylation
GO:0043039	biological_process	tRNA aminoacylation
GO:0005737	cellular_component	cytoplasm
GO:0003676	molecular_function	nucleic acid binding
GO:0000166	molecular_function	nucleotide binding
GO:0004813	molecular_function	alanine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	131.517
	SRR3591706	second leaf	84.612
	SRR3591707	mature leaf	134.381
	SRR3591708	Shoot apex	91.388
	SRR3591709	Stem	126.562
	SRR3591710	White floral bud	120.231
	SRR3591711	White flower	138.298
	SRR3591712	Green floral bud	121.484
	SRR3591713	Yellow flower	129.214
SRP173429	SRR8316895	Juvenile bud stage	62.243
	SRR8316896	Juvenile bud stage	95.300
	SRR8316897	Juvenile bud stage	45.522
	SRR8316894	Third green stage	43.954
	SRR8316900	Third green stage	120.614
	SRR8316901	Third green stage	114.677
	SRR8316898	Complete white stage	29.416
	SRR8316899	Complete white stage	122.742
	SRR8316903	Complete white stage	75.171
	SRR8316902	Silver flowering stage	45.066
	SRR8316904	Silver flowering stage	74.006
	SRR8316905	Silver flowering stage	34.767
	SRR8316906	Gold flowering stage	114.954
	SRR8316907	Gold flowering stage	101.080
	SRR8316908	Gold flowering stage	119.581
SRP132670	SRR6706286	Control	96.079
	SRR6706287	Light intensity 50%	102.510
	SRR6706288	Light intensity 20%	105.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	63.082
	CNS0095593	Slightly white alabastrum(diploid) 2	71.497
	CNS0095594	Slightly white alabastrum(diploid) 3	63.592
	CNS0095595	Whole white alabastrum(diploid) 2	67.141
	CNS0095596	Whole white alabastrum(diploid) 3	57.271
	CNS0095597	Whole white alabastrum(diploid) 4	59.114
	CNS0095598	Silvery flower (diploied) 1	86.176
	CNS0095599	Silvery flower (diploied) 2	72.392
	CNS0095600	Silvery flower (diploied) 3	121.506
	CNS0095601	Golden flower (diploid) 1	74.071
	CNS0095602	Golden flower (diploid) 2	115.683
	CNS0095603	Golden flower (diploid) 3	109.114
	CNS0095604	Slightly white alabastrum(tetraploid) 1	73.200
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.727
	CNS0095606	Slightly white alabastrum(tetraploid) 3	125.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.213
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.406
	CNS0095609	Whole white alabastrum(tetraploid) 3	110.132
	CNS0095610	Silvery flower (tetraploid) 1	125.934
	CNS0095611	Silvery flower (tetraploid) 2	125.966
	CNS0095612	Silvery flower (tetraploid) 3	75.199
	CNS0095613	Golden flower (tetraploid) 1	66.865
	CNS0095614	Golden flower (tetraploid) 2	119.452
	CNS0095615	Golden flower (tetraploid) 3	103.106
CRA001975	CRR073297	Stem 1	86.114
	CRR073298	Stem 2	84.397
	CRR073299	Stem 3	64.033
	CRR073300	Leaf 1	123.865
	CRR073301	Leaf 2	102.175
	CRR073302	Leaf 3	76.960
	CRR073303	Juvenile bud 1	89.092
	CRR073304	Juvenile bud 2	63.209
	CRR073305	Juvenile bud 3	114.586
	CRR073306	Third green 1	19.730
	CRR073307	Third green 2	18.104
	CRR073308	Third green 3	26.786
	CRR073309	Second white 1	20.652
	CRR073310	Second white 2	30.343
	CRR073311	Second white 3	33.789
	CRR073312	Silver flowering 1	26.342
	CRR073313	Silver flowering 2	25.117
	CRR073314	Silver flowering 3	22.887
	CRR073315	Gold flowering 1	49.104
	CRR073316	Gold flowering 2	90.652
	CRR073317	Gold flowering 3	51.502
	CRR073318	Tawny withering 1	81.132
	CRR073319	Tawny withering 2	88.208
	CRR073320	Tawny withering 3	74.497