Detail information of GWHGAAZE027266


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006452377.10hypothetical protein CICLE_v10007338mg [Citrus clementina]
COGYP_005443915.10aconitate hydratase
Swissprottr|P49608|ACOC_CUCMA0Aconitate hydratase, cytoplasmic
trEMBLtr|A0A067FHT6|A0A067FHT6_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO62731.1}
TAIR10AT2G05710.10aconitase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1698944517003252-
GWHAAZE00000008mRNA1698944517003252-
GWHAAZE00000008exon1698944516989980-
GWHAAZE00000008exon1699015616990398-
GWHAAZE00000008exon1699048716990585-
GWHAAZE00000008exon1699102716991506-
GWHAAZE00000008exon1699159516991693-
GWHAAZE00000008exon1699227516992396-
GWHAAZE00000008exon1699322916993347-
GWHAAZE00000008exon1699346816993535-
GWHAAZE00000008exon1699528816995473-
GWHAAZE00000008exon1699574216995817-
GWHAAZE00000008exon1699591416995993-
GWHAAZE00000008exon1699609916996155-
GWHAAZE00000008exon1699625616996398-
GWHAAZE00000008exon1699649116996635-
GWHAAZE00000008exon1699690416997065-
GWHAAZE00000008exon1699730116997486-
GWHAAZE00000008exon1699781616997908-
GWHAAZE00000008exon1699798616998146-
GWHAAZE00000008exon1699836016998496-
GWHAAZE00000008exon1699983917000051-
GWHAAZE00000008exon1700230717002334-
GWHAAZE00000008exon1700309617003252-
GWHAAZE00000008CDS1700309617003252-
GWHAAZE00000008CDS1700230717002334-
GWHAAZE00000008CDS1699983917000051-
GWHAAZE00000008CDS1699836016998496-
GWHAAZE00000008CDS1699798616998146-
GWHAAZE00000008CDS1699781616997908-
GWHAAZE00000008CDS1699730116997486-
GWHAAZE00000008CDS1699690416997065-
GWHAAZE00000008CDS1699649116996635-
GWHAAZE00000008CDS1699625616996398-
GWHAAZE00000008CDS1699609916996155-
GWHAAZE00000008CDS1699591416995993-
GWHAAZE00000008CDS1699574216995817-
GWHAAZE00000008CDS1699528816995473-
GWHAAZE00000008CDS1699346816993535-
GWHAAZE00000008CDS1699322916993347-
GWHAAZE00000008CDS1699227516992396-
GWHAAZE00000008CDS1699159516991693-
GWHAAZE00000008CDS1699102716991506-
GWHAAZE00000008CDS1699048716990585-
GWHAAZE00000008CDS1699015616990398-
GWHAAZE00000008CDS1698991216989980-
GWHAAZE00000008three_prime_UTR1698944516989911-
Transcript Sequence

Network for GWHGAAZE027266

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0086


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00330.21Aconitase2077101.60E-177
PF00694.20Aconitase_C8399666.10E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01681ACO, acnA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation pathways in prokaryotesmap00720

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE027266.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30100200255075125150175225250275300Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf249.561
SRR3591706second leaf82.529
SRR3591707mature leaf90.781
SRR3591708Shoot apex119.746
SRR3591709Stem160.974
SRR3591710White floral bud198.683
SRR3591711White flower206.083
SRR3591712Green floral bud218.710
SRR3591713Yellow flower186.783
SRP173429 SRR8316895Juvenile bud stage 107.497
SRR8316896Juvenile bud stage 161.133
SRR8316897Juvenile bud stage 79.918
SRR8316894Third green stage 73.512
SRR8316900Third green stage 243.713
SRR8316901Third green stage 228.142
SRR8316898Complete white stage 71.239
SRR8316899Complete white stage 207.402
SRR8316903Complete white stage 146.288
SRR8316902Silver flowering stage73.789
SRR8316904Silver flowering stage104.394
SRR8316905Silver flowering stage51.714
SRR8316906Gold flowering stage 163.982
SRR8316907Gold flowering stage 170.889
SRR8316908Gold flowering stage 172.296
SRP132670SRR6706286Control237.715
SRR6706287Light intensity 50%249.101
SRR6706288Light intensity 20%266.124
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1127.393
CNS0095593Slightly white alabastrum(diploid) 2132.484
CNS0095594Slightly white alabastrum(diploid) 3116.638
CNS0095595Whole white alabastrum(diploid) 2130.524
CNS0095596Whole white alabastrum(diploid) 3146.671
CNS0095597Whole white alabastrum(diploid) 4118.215
CNS0095598Silvery flower (diploied) 1111.232
CNS0095599Silvery flower (diploied) 2128.103
CNS0095600Silvery flower (diploied) 3217.470
CNS0095601Golden flower (diploid) 1106.648
CNS0095602Golden flower (diploid) 2200.228
CNS0095603Golden flower (diploid) 3193.479
CNS0095604Slightly white alabastrum(tetraploid) 1157.731
CNS0095605Slightly white alabastrum(tetraploid) 2132.685
CNS0095606Slightly white alabastrum(tetraploid) 3240.620
CNS0095607Whole white alabastrum(tetraploid) 1117.885
CNS0095608Whole white alabastrum(tetraploid) 2115.718
CNS0095609Whole white alabastrum(tetraploid) 3246.080
CNS0095610Silvery flower (tetraploid) 1225.915
CNS0095611Silvery flower (tetraploid) 2238.561
CNS0095612Silvery flower (tetraploid) 3184.522
CNS0095613Golden flower (tetraploid) 1109.633
CNS0095614Golden flower (tetraploid) 2201.601
CNS0095615Golden flower (tetraploid) 3125.602
CRA001975CRR073297Stem 1163.188
CRR073298Stem 2152.780
CRR073299Stem 3136.052
CRR073300Leaf 1212.313
CRR073301Leaf 2197.060
CRR073302Leaf 3169.913
CRR073303Juvenile bud 1192.276
CRR073304Juvenile bud 2151.144
CRR073305Juvenile bud 3262.011
CRR073306Third green 1111.591
CRR073307Third green 287.471
CRR073308Third green 3101.115
CRR073309Second white 1136.320
CRR073310Second white 293.054
CRR073311Second white 3114.644
CRR073312Silver flowering 1106.335
CRR073313Silver flowering 2117.059
CRR073314Silver flowering 3113.906
CRR073315Gold flowering 134.655
CRR073316Gold flowering 260.326
CRR073317Gold flowering 342.209
CRR073318Tawny withering 199.327
CRR073319Tawny withering 284.402
CRR073320Tawny withering 396.643