Detail information of GWHGAAZE027270


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002279664.16.29974E-69PREDICTED: autophagy-related protein 8C [Vitis vinifera]
Swissprottr|Q6Z1D5|ATG8C_ORYSJ3E-69Autophagy-related protein 8C (Precursor)
trEMBLtr|D7T7Z0|D7T7Z0_VITVI2E-69Autophagy-related protein {ECO:0000256|RuleBase:RU004384}
TAIR10AT1G62040.23E-53Ubiquitin-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1704398517044975+
GWHAAZE00000008mRNA1704398517044975+
GWHAAZE00000008exon1704398517044038+
GWHAAZE00000008exon1704413717044189+
GWHAAZE00000008exon1704445417044572+
GWHAAZE00000008exon1704465717044975+
GWHAAZE00000008CDS1704398517044038+
GWHAAZE00000008CDS1704413717044189+
GWHAAZE00000008CDS1704445417044572+
GWHAAZE00000008CDS1704465717044751+
GWHAAZE00000008three_prime_UTR1704475217044975+
Transcript Sequence

Network for GWHGAAZE027270

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02991.17Atg811041.50E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08341GABARAP, ATG8, LC3 Apelin signaling pathway map04371
FoxO signaling pathwaymap04068
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Mitophagy - animalmap04137
Mitophagy - yeastmap04139
NOD-like receptor signaling pathwaymap04621
GABAergic synapsemap04727
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf73.057
SRR3591706second leaf37.064
SRR3591707mature leaf76.453
SRR3591708Shoot apex59.387
SRR3591709Stem183.247
SRR3591710White floral bud98.562
SRR3591711White flower105.733
SRR3591712Green floral bud80.220
SRR3591713Yellow flower101.937
SRP173429 SRR8316895Juvenile bud stage 67.856
SRR8316896Juvenile bud stage 104.959
SRR8316897Juvenile bud stage 19.857
SRR8316894Third green stage 34.319
SRR8316900Third green stage 103.371
SRR8316901Third green stage 110.530
SRR8316898Complete white stage 62.604
SRR8316899Complete white stage 201.612
SRR8316903Complete white stage 102.212
SRR8316902Silver flowering stage58.189
SRR8316904Silver flowering stage74.591
SRR8316905Silver flowering stage44.608
SRR8316906Gold flowering stage 126.723
SRR8316907Gold flowering stage 135.200
SRR8316908Gold flowering stage 78.764
SRP132670SRR6706286Control81.296
SRR6706287Light intensity 50%77.654
SRR6706288Light intensity 20%85.426
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1111.392
CNS0095593Slightly white alabastrum(diploid) 2122.531
CNS0095594Slightly white alabastrum(diploid) 3127.763
CNS0095595Whole white alabastrum(diploid) 2103.240
CNS0095596Whole white alabastrum(diploid) 398.518
CNS0095597Whole white alabastrum(diploid) 4110.060
CNS0095598Silvery flower (diploied) 1137.251
CNS0095599Silvery flower (diploied) 2127.976
CNS0095600Silvery flower (diploied) 3140.364
CNS0095601Golden flower (diploid) 1139.884
CNS0095602Golden flower (diploid) 2139.378
CNS0095603Golden flower (diploid) 3136.527
CNS0095604Slightly white alabastrum(tetraploid) 191.804
CNS0095605Slightly white alabastrum(tetraploid) 279.503
CNS0095606Slightly white alabastrum(tetraploid) 383.487
CNS0095607Whole white alabastrum(tetraploid) 187.279
CNS0095608Whole white alabastrum(tetraploid) 272.847
CNS0095609Whole white alabastrum(tetraploid) 380.117
CNS0095610Silvery flower (tetraploid) 1124.747
CNS0095611Silvery flower (tetraploid) 2130.894
CNS0095612Silvery flower (tetraploid) 3111.810
CNS0095613Golden flower (tetraploid) 1134.694
CNS0095614Golden flower (tetraploid) 2111.663
CNS0095615Golden flower (tetraploid) 3152.321
CRA001975CRR073297Stem 141.736
CRR073298Stem 242.049
CRR073299Stem 342.892
CRR073300Leaf 149.566
CRR073301Leaf 244.560
CRR073302Leaf 352.728
CRR073303Juvenile bud 170.414
CRR073304Juvenile bud 244.079
CRR073305Juvenile bud 374.176
CRR073306Third green 129.290
CRR073307Third green 246.865
CRR073308Third green 331.405
CRR073309Second white 153.431
CRR073310Second white 248.856
CRR073311Second white 331.085
CRR073312Silver flowering 137.029
CRR073313Silver flowering 239.316
CRR073314Silver flowering 330.408
CRR073315Gold flowering 156.108
CRR073316Gold flowering 254.004
CRR073317Gold flowering 357.816
CRR073318Tawny withering 138.765
CRR073319Tawny withering 249.091
CRR073320Tawny withering 351.699