Gene detail

Detail information of GWHGAAZE027284

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP40450.1	6.3154E-97	hypothetical protein JCGZ_03950 [Jatropha curcas]
Swissprot	tr\|Q9SU25\|T2FA_ARATH	1E-75	Transcription initiation factor IIF subunit alpha
trEMBL	tr\|A0A067L7G8\|A0A067L7G8_JATCU	2E-97	Uncharacterized protein {ECO:0000313\|EMBL:KDP40450.1}
TAIR10	AT4G12610.2	1E-46	transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17166498	17175021	-
GWHAAZE00000008	mRNA	17166498	17175021	-
GWHAAZE00000008	exon	17174851	17175021	-
GWHAAZE00000008	exon	17170404	17170562	-
GWHAAZE00000008	exon	17169306	17169451	-
GWHAAZE00000008	exon	17168500	17168650	-
GWHAAZE00000008	exon	17167416	17167640	-
GWHAAZE00000008	exon	17167099	17167317	-
GWHAAZE00000008	exon	17166498	17166587	-
GWHAAZE00000008	CDS	17174851	17175021	-
GWHAAZE00000008	CDS	17170404	17170562	-
GWHAAZE00000008	CDS	17169306	17169451	-
GWHAAZE00000008	CDS	17168500	17168650	-
GWHAAZE00000008	CDS	17167416	17167640	-
GWHAAZE00000008	CDS	17167099	17167317	-
GWHAAZE00000008	CDS	17166498	17166587	-

Transcript Sequence
>GWHTAAZE027318 ATGTCGTTTGATCTGATGTTGAAGCCATCTTGTAGTGGCTGTGGATCGACAGTGGAACTGTACGGAAGTAATTGCAAGCACTTGACCCTTTGTGTGTCATGCGGCAAAACCATGGCCGAAAACCGTGGCAAGTGTTACGAGTGTGGCGCTACAATCTCTCGATTGATTCGGGAATACAATGTACGGGCATGTTCTAGCAACGACAAGAATTACTTCATAGGTAGATTTGTGCAAGGTTTACCAAGTTTTTCAAAGAAGAAGAATGCTGAAAATAAATGGTCTCTCCAGAAAGAAGGATTACAAGGACGCCAAATTACAGATACCTTACGGGAGAAGTTCAAGAATAAACCTTGGCTGTTAGAGGATGAAACAGGGCAGTTTCAATACCAGGGTGTGCTTGAGGGTGCACAGTCAGCCACATACTACCTACTAATGCTGCAGGGAAAGGAGTTCGTTGCTATTCCTGCTGGATCTTGTAAATTCCTGATGATCTGCTATTCGTTAATGCTAGGGGATGATTGGGAGCATGAAGAAATTTTTACTGACGACGATGAAGCTGTTGCAATTGATCCAGAGGAACGCGAAGATTTGGCCCCAGAAATTCCTGCTCCTCCAGAAATTAAGCAGATGGAAGATGAAGTTGGTCTTTCTCCTGTACTAGCTCCAAAGCAGAAGGATGCTCCTAAAGAAGAACCCGTTGACAACAGCCCTTCAAAACCAGCTACTGCTACTACAGGGTCTGCGCGCAGTACCCCATCCGGCTCTAAGTCTGCAAAAGGGAAGAGAAAAACAAATGGGGATGATACAAAAGCAACTAATGGCGCACCTACTAAAAAAGTCAAGACAGAAAACGATGTCAAAATTGTGAAAGATGAACCTGCTTCTGGTGCAAAGAATAGTAATAGTGTGCCTGCAAAAGGTGCAGCAGCGGCAGCATCTGCAAAAGCTGGGGCGACTGCATCTTCTGGACCTGTCACAGAAGAGGAAATCAGGGCTGTTTTGATGCAGAAAACTCCAGTCACTACGCAGGATCTTGTTGCTAAATTTAAATCTAGACTAAAATCCAAAGAGGACAAGGATGCTTTTGCAGCTATTCTTAGGAGGATTTCAAAGATACAGAAGACCAACGGGCCTAGTTATGTCGTTTTGAGAGACAAATGA

Network for GWHGAAZE027284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05793.13	TFIIF_alpha	48	158	7.00E-27
PF05793.13	TFIIF_alpha	211	384	2.80E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03138	TFIIF1, GTF2F1, TFG1	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter
GO:0032968	biological_process	positive regulation of transcription elongation from RNA polymerase II promoter
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.844
	SRR3591706	second leaf	38.609
	SRR3591707	mature leaf	41.547
	SRR3591708	Shoot apex	59.890
	SRR3591709	Stem	76.012
	SRR3591710	White floral bud	67.289
	SRR3591711	White flower	77.922
	SRR3591712	Green floral bud	60.922
	SRR3591713	Yellow flower	81.736
SRP173429	SRR8316895	Juvenile bud stage	43.922
	SRR8316896	Juvenile bud stage	64.143
	SRR8316897	Juvenile bud stage	25.875
	SRR8316894	Third green stage	24.928
	SRR8316900	Third green stage	66.429
	SRR8316901	Third green stage	69.048
	SRR8316898	Complete white stage	26.596
	SRR8316899	Complete white stage	91.708
	SRR8316903	Complete white stage	57.484
	SRR8316902	Silver flowering stage	39.491
	SRR8316904	Silver flowering stage	57.578
	SRR8316905	Silver flowering stage	30.496
	SRR8316906	Gold flowering stage	104.097
	SRR8316907	Gold flowering stage	99.434
	SRR8316908	Gold flowering stage	88.741
SRP132670	SRR6706286	Control	105.660
	SRR6706287	Light intensity 50%	97.045
	SRR6706288	Light intensity 20%	97.700
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.078
	CNS0095593	Slightly white alabastrum(diploid) 2	53.284
	CNS0095594	Slightly white alabastrum(diploid) 3	45.532
	CNS0095595	Whole white alabastrum(diploid) 2	47.796
	CNS0095596	Whole white alabastrum(diploid) 3	37.286
	CNS0095597	Whole white alabastrum(diploid) 4	42.295
	CNS0095598	Silvery flower (diploied) 1	64.011
	CNS0095599	Silvery flower (diploied) 2	47.216
	CNS0095600	Silvery flower (diploied) 3	59.452
	CNS0095601	Golden flower (diploid) 1	56.841
	CNS0095602	Golden flower (diploid) 2	60.711
	CNS0095603	Golden flower (diploid) 3	62.948
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.528
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	75.272
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.860
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.898
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.011
	CNS0095610	Silvery flower (tetraploid) 1	83.103
	CNS0095611	Silvery flower (tetraploid) 2	66.027
	CNS0095612	Silvery flower (tetraploid) 3	61.392
	CNS0095613	Golden flower (tetraploid) 1	57.497
	CNS0095614	Golden flower (tetraploid) 2	75.359
	CNS0095615	Golden flower (tetraploid) 3	62.134
CRA001975	CRR073297	Stem 1	69.117
	CRR073298	Stem 2	72.063
	CRR073299	Stem 3	49.317
	CRR073300	Leaf 1	78.232
	CRR073301	Leaf 2	78.792
	CRR073302	Leaf 3	47.488
	CRR073303	Juvenile bud 1	55.293
	CRR073304	Juvenile bud 2	47.782
	CRR073305	Juvenile bud 3	64.371
	CRR073306	Third green 1	39.319
	CRR073307	Third green 2	33.956
	CRR073308	Third green 3	43.112
	CRR073309	Second white 1	26.080
	CRR073310	Second white 2	42.891
	CRR073311	Second white 3	39.703
	CRR073312	Silver flowering 1	34.719
	CRR073313	Silver flowering 2	28.890
	CRR073314	Silver flowering 3	33.991
	CRR073315	Gold flowering 1	25.623
	CRR073316	Gold flowering 2	37.391
	CRR073317	Gold flowering 3	14.987
	CRR073318	Tawny withering 1	49.835
	CRR073319	Tawny withering 2	49.254
	CRR073320	Tawny withering 3	48.398