Gene detail

Detail information of GWHGAAZE027286

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657218.1	8.9445E-159	PREDICTED: condensin complex subunit 2 [Vitis vinifera]
Swissprot	tr\|Q564K3\|CND2_ARATH	1E-141	Condensin complex subunit 2
trEMBL	tr\|D7TEB5\|D7TEB5_VITVI	3E-159	Condensin complex subunit 2 {ECO:0000256\|PIRNR:PIRNR017126}
TAIR10	AT2G32590.1	5E-106	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17180672	17185082	-
GWHAAZE00000008	mRNA	17180672	17185082	-
GWHAAZE00000008	exon	17184876	17185082	-
GWHAAZE00000008	exon	17183012	17183129	-
GWHAAZE00000008	exon	17182256	17182329	-
GWHAAZE00000008	exon	17182116	17182176	-
GWHAAZE00000008	exon	17181808	17182008	-
GWHAAZE00000008	exon	17181417	17181703	-
GWHAAZE00000008	exon	17181118	17181262	-
GWHAAZE00000008	exon	17180672	17181024	-
GWHAAZE00000008	CDS	17184876	17185082	-
GWHAAZE00000008	CDS	17183012	17183129	-
GWHAAZE00000008	CDS	17182256	17182329	-
GWHAAZE00000008	CDS	17182116	17182176	-
GWHAAZE00000008	CDS	17181808	17182008	-
GWHAAZE00000008	CDS	17181417	17181703	-
GWHAAZE00000008	CDS	17181118	17181262	-
GWHAAZE00000008	CDS	17180672	17181024	-

Transcript Sequence
>GWHTAAZE027320 ATGCGCCTCCAATCGCCGAAGAGTCCTTTCTTACTCGGCTCCAACGACGATCAACTTGAACGTGCCCACGCACGCGCCATCCGTGCTGCCTCTGCACGCCGTAAAGCCATGGTTTCTCCTCCCTCTACGGCTCATGCTGTTCCGTGTCTCAGTAGAGAACAGATAATTGAGTTATTCCAGAATTGCATTAAACTCGCTACCGAAAATGCAAGCTGCACATTAGAAGCTGGAGTGAAGATATACTCTTTAAGGGTGGATTCAGTGCACTCTGAGGCATATAAGGTACTTGGTCGAATCATTCGAGCTGGTGGAGAGAAGGAAGAAGAAATTTTGGTGGTGGATGATGACACAAACAATGGACCAAATGAGGATCATTCTAAGAAAGAGAGAGACAAGAAGATTTCACCTTTGTCAACATTGGAATCTTCTTTCGAAGCGCTTAATGTCAAGAAATGTGACACTGCATTTGCAGTTGATCCTCTTTATCATCAGACATCTGCACAATTCGATGAAGGTGGAGCGAGGGGTCTCTTATTGAACAATCTCGGACTATATGGAGGGTGTAGGGTACTTTTTGATTCCTTGGAATTACCAAGGAAGTGCATGCTATGTTCAATCCAAGATCCTAATGCAACTAAAATTGATATCTCTTTTGTCAAAGAGCACATCGAGCATATGGTGATGAACATGCCTGTAAAGAATGAAATTTCTCCAACTCTTAAGGATATTATCAATCACTTTAATAACGACAATCAGAGCCTGTCACATACAATTAATGAAGGCCAGAAATCTGCAGGGTGTGCCGATGCAGTTGATAACAACAATATTCAATTGGATGGTGATTTTTTTGGGAACTTTGAGCCAGGGAATTTTGATCATGAACAGGAGATCACTGTGGTTGGTGAGAGCTTCACTTTTGGAAGGACAACTTTTTCAAGTCACTGTGAGGAGGATGAACCCTGCAAGTCATTTGAGCTAGACATGGCTGGAAGATCGGAGGAAATTGCTTCATTTTTGTTCAAAAGTTCATTATTCACAAAAAAACAGAATGCATGGGCAGGTCCTGATCATTGGAAGTACCATAAGCCTAAGGGTTCAGAAGATGTTCCTGTTGCTGAGGGCAGATTAGACGTTACAACCAAGAGAATAAAAGACAATAAACTGGCTGAACATGATATTGATTTTTCAAAGTCTTTGGACCAAAAGACGCCTGATGATATATTTGTTCCTCCCAAAAATCCGATGACACTTTTGTTACCTGCAAATAGGTTGCTTTGGGAGAGCAAACTTCCAGAAGATTGTCATTATCAACCAGAAGATCTTGTCAAGATGTTTCTTCTTCCTAATGTTATGGTAATATATCTTTTACTCATAAAGAACTATGAATCATTACATGGATTGCCACGAGTGGACTTTAAGTTTCATATTCTGTCAAGGCTGGAGTAG

Network for GWHGAAZE027286

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05786.15	Cnd2	70	452	7.40E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06676	BRRN1, BRN1, CAPH	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0007076	biological_process	mitotic chromosome condensation
GO:0000796	cellular_component	condensin complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.625
	SRR3591706	second leaf	1.020
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	3.862
	SRR3591709	Stem	2.978
	SRR3591710	White floral bud	0.735
	SRR3591711	White flower	0.239
	SRR3591712	Green floral bud	1.259
	SRR3591713	Yellow flower	0.076
SRP173429	SRR8316895	Juvenile bud stage	0.909
	SRR8316896	Juvenile bud stage	1.151
	SRR8316897	Juvenile bud stage	0.265
	SRR8316894	Third green stage	0.548
	SRR8316900	Third green stage	0.695
	SRR8316901	Third green stage	0.793
	SRR8316898	Complete white stage	0.265
	SRR8316899	Complete white stage	1.037
	SRR8316903	Complete white stage	0.291
	SRR8316902	Silver flowering stage	0.058
	SRR8316904	Silver flowering stage	0.167
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.048
	SRR8316907	Gold flowering stage	0.261
	SRR8316908	Gold flowering stage	0.108
SRP132670	SRR6706286	Control	0.601
	SRR6706287	Light intensity 50%	0.562
	SRR6706288	Light intensity 20%	0.665
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.152
	CNS0095593	Slightly white alabastrum(diploid) 2	0.533
	CNS0095594	Slightly white alabastrum(diploid) 3	1.203
	CNS0095595	Whole white alabastrum(diploid) 2	0.330
	CNS0095596	Whole white alabastrum(diploid) 3	0.353
	CNS0095597	Whole white alabastrum(diploid) 4	0.920
	CNS0095598	Silvery flower (diploied) 1	0.455
	CNS0095599	Silvery flower (diploied) 2	0.122
	CNS0095600	Silvery flower (diploied) 3	0.373
	CNS0095601	Golden flower (diploid) 1	0.612
	CNS0095602	Golden flower (diploid) 2	0.285
	CNS0095603	Golden flower (diploid) 3	0.364
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.608
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.005
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.930
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.514
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.263
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.814
	CNS0095610	Silvery flower (tetraploid) 1	0.149
	CNS0095611	Silvery flower (tetraploid) 2	0.310
	CNS0095612	Silvery flower (tetraploid) 3	0.105
	CNS0095613	Golden flower (tetraploid) 1	0.111
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.005
CRA001975	CRR073297	Stem 1	0.472
	CRR073298	Stem 2	1.336
	CRR073299	Stem 3	0.944
	CRR073300	Leaf 1	0.654
	CRR073301	Leaf 2	0.257
	CRR073302	Leaf 3	0.309
	CRR073303	Juvenile bud 1	0.399
	CRR073304	Juvenile bud 2	0.243
	CRR073305	Juvenile bud 3	0.099
	CRR073306	Third green 1	0.261
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.247
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.176
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.100
	CRR073316	Gold flowering 2	0.733
	CRR073317	Gold flowering 3	0.139
	CRR073318	Tawny withering 1	1.021
	CRR073319	Tawny withering 2	0.202
	CRR073320	Tawny withering 3	0.926