Detail information of GWHGAAZE027300


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010644502.10PREDICTED: uncharacterized protein LOC104877603 isoform X2 [Vitis vinifera]
Swissprottr|Q5PNS0|Y3228_ARATH2E-41PHD finger protein At3g20280
trEMBLtr|A0A068UZE7|A0A068UZE7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313|EMBL:CDP13776.1}
TAIR10AT1G50620.17E-77RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1734080317346764-
GWHAAZE00000008mRNA1734080317346764-
GWHAAZE00000008exon1734669417346764-
GWHAAZE00000008exon1734600017346530-
GWHAAZE00000008exon1734491817345278-
GWHAAZE00000008exon1734290717344291-
GWHAAZE00000008exon1734255517342668-
GWHAAZE00000008exon1734226117342309-
GWHAAZE00000008exon1734080317340867-
GWHAAZE00000008five_prime_UTR1734669417346764-
GWHAAZE00000008five_prime_UTR1734642317346530-
GWHAAZE00000008CDS1734600017346422-
GWHAAZE00000008CDS1734491817345278-
GWHAAZE00000008CDS1734290717344291-
GWHAAZE00000008CDS1734255517342668-
GWHAAZE00000008CDS1734226117342309-
GWHAAZE00000008CDS1734080317340867-
Transcript Sequence

Network for GWHGAAZE027300

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD3854325.80E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.793
SRR3591706second leaf10.710
SRR3591707mature leaf11.190
SRR3591708Shoot apex18.166
SRR3591709Stem13.867
SRR3591710White floral bud13.329
SRR3591711White flower15.802
SRR3591712Green floral bud8.935
SRR3591713Yellow flower13.232
SRP173429 SRR8316895Juvenile bud stage 5.868
SRR8316896Juvenile bud stage 6.808
SRR8316897Juvenile bud stage 2.870
SRR8316894Third green stage 3.299
SRR8316900Third green stage 5.510
SRR8316901Third green stage 6.473
SRR8316898Complete white stage 3.305
SRR8316899Complete white stage 11.445
SRR8316903Complete white stage 7.194
SRR8316902Silver flowering stage5.360
SRR8316904Silver flowering stage8.540
SRR8316905Silver flowering stage4.035
SRR8316906Gold flowering stage 11.473
SRR8316907Gold flowering stage 9.931
SRR8316908Gold flowering stage 11.698
SRP132670SRR6706286Control8.993
SRR6706287Light intensity 50%8.250
SRR6706288Light intensity 20%8.979
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.086
CNS0095593Slightly white alabastrum(diploid) 24.334
CNS0095594Slightly white alabastrum(diploid) 34.259
CNS0095595Whole white alabastrum(diploid) 25.469
CNS0095596Whole white alabastrum(diploid) 34.101
CNS0095597Whole white alabastrum(diploid) 45.387
CNS0095598Silvery flower (diploied) 113.693
CNS0095599Silvery flower (diploied) 28.554
CNS0095600Silvery flower (diploied) 312.237
CNS0095601Golden flower (diploid) 110.482
CNS0095602Golden flower (diploid) 213.816
CNS0095603Golden flower (diploid) 314.852
CNS0095604Slightly white alabastrum(tetraploid) 14.761
CNS0095605Slightly white alabastrum(tetraploid) 24.641
CNS0095606Slightly white alabastrum(tetraploid) 312.588
CNS0095607Whole white alabastrum(tetraploid) 14.434
CNS0095608Whole white alabastrum(tetraploid) 22.830
CNS0095609Whole white alabastrum(tetraploid) 35.009
CNS0095610Silvery flower (tetraploid) 111.439
CNS0095611Silvery flower (tetraploid) 213.145
CNS0095612Silvery flower (tetraploid) 311.172
CNS0095613Golden flower (tetraploid) 16.982
CNS0095614Golden flower (tetraploid) 29.497
CNS0095615Golden flower (tetraploid) 311.753
CRA001975CRR073297Stem 19.512
CRR073298Stem 29.423
CRR073299Stem 38.950
CRR073300Leaf 19.397
CRR073301Leaf 27.623
CRR073302Leaf 34.933
CRR073303Juvenile bud 16.178
CRR073304Juvenile bud 23.990
CRR073305Juvenile bud 36.592
CRR073306Third green 14.747
CRR073307Third green 23.705
CRR073308Third green 35.867
CRR073309Second white 13.867
CRR073310Second white 26.078
CRR073311Second white 35.759
CRR073312Silver flowering 15.695
CRR073313Silver flowering 25.226
CRR073314Silver flowering 36.232
CRR073315Gold flowering 15.493
CRR073316Gold flowering 28.237
CRR073317Gold flowering 35.687
CRR073318Tawny withering 18.124
CRR073319Tawny withering 27.530
CRR073320Tawny withering 38.528